These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6399#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 358 fasta sequence [CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CD194050 [CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGC ] [+] EMBL AF025539 [ ACGAAGAAAGTTGGCATAGTTGGAAAGTATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL SMAA85210 [ TCAAAAAGATAGAAATCAGCCAGCATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAATATAGTTGGTCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6399#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [CGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCCGCTAAAAAAAAAAAAAAAAAA] [-] EMBL AI395714 [CGTTGAAAAGAAAAGCAGCTGGCATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACAACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAAACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCCGCTAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6399#0 CGGTCGCGCGTTTTATCAAGGATGGCTAAAAGGACGAAGAAAGTTGGCATAGTTGGAAAG 60 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 TATGGTGTTCGATACGGTGCTTCTCTCAGGAAGACCATCAAAAAGATAGAAATCAGCCAG 120 consensus_6399#1 ------------------------------------------------------------ consensus_6399#0 CATGCTAAATACAACTGCAATTTTTGTGGGAAGGATTCGTTGAAAAGAAAAGCAGCTGGC 180 consensus_6399#1 -------------------------------------CGTTGAAAAGAAAAGCAGCTGGC 23 *********************** consensus_6399#0 ATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACA 240 consensus_6399#1 ATATGGGAATGCAAGGCGTGTAAAAAAGTAGTAGCTGGTGGCGCTTATGTTTGCAGTACA 83 ************************************************************ consensus_6399#0 ACGGCGGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAA 300 consensus_6399#1 ACGGCCGCGACAACAATTCGGGCTGCTATCAGGCGCTTGCGTGATGCCCACGAATCATAA 143 ***** ****************************************************** consensus_6399#0 ACTATGTTTTAAAAAAA-TATAGTTGGTCTGCTA---AAAAAAA---------------- 340 consensus_6399#1 ACTATGTTTTAAAAAAAATATAGTTGGTCTGCTACCTAAATATATTTTTGACTTAAAGCC 203 ***************** **************** *** * * consensus_6399#0 ---AAAAAAAAAAAAAAAAAA 358 consensus_6399#1 GCTAAAAAAAAAAAAAAAAAA 224 ****************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||