These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6408#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC-AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA] [+] EMBL CD181443 [GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACT ] [-] EMBL CD191203 [ TTACTACTGGATGAATTGATAAACAACCATTATACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGA CCTAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA] consensusID : consensus_6408#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG-TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG] [-] EMBL CD134231 [GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG] [-] EMBL CD134328 [ AAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6408#0 GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGT 60 consensus_6408#1 ------------------------------------------------------------ consensus_6408#0 CTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATT 120 consensus_6408#1 ------------------------------------------------------------ consensus_6408#0 AAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAAC 180 consensus_6408#1 ------------------------------------------------------------ consensus_6408#0 TACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 240 consensus_6408#1 --GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 58 ** * * ****************************************** consensus_6408#0 AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACA 300 consensus_6408#1 AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAA------------------------ 94 ************************************ consensus_6408#0 CTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCA 360 consensus_6408#1 ------ATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCA 148 ********************* ***** ******* ********** ***** consensus_6408#0 GGACCCTAAAAAAAATCA-GAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGT 419 consensus_6408#1 GGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTT 208 ***** *********** *************************************** * consensus_6408#0 TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 479 consensus_6408#1 TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 268 ************************************************************ consensus_6408#0 ACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 539 consensus_6408#1 ACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 328 ********* ************************************************** consensus_6408#0 CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 599 consensus_6408#1 CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 388 ************************************************************ consensus_6408#0 ACATATCCGTTACTCCTAGTAACAGCGCAGTG----CAATAGAATTCCCA---------- 645 consensus_6408#1 ACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTG 448 ******************** * * * ** * ** * * consensus_6408#0 ------------------------------------------------------------ consensus_6408#1 GAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATA 508 consensus_6408#0 -------------- consensus_6408#1 CTCATCTAGTAACG 522 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||