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Schistosoma mansoni
cluster # 6408 cluster # 6408       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6408#0 length = 645 sequences # 2  
consensus_6408#1 length = 522 sequences # 2  

consensusID : consensus_6408#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 645
fasta sequence
                              [GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC-AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA]

[+] EMBL CD181443             [GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGTCTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATTAAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAACTACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCAGGACCCTAAAAAAAATC AGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTTCCACAGTGACT                                                                                                                                                                                                                      ]
[-] EMBL CD191203             [                                                                                                                                                                                                       TTACTACTGGATGAATTGATAAACAACCATTATACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACACTTTAGATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGA CCTAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA]


>consensus_6408#0 GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGT CTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATT AAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAAC TACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACA CTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCA GGACCCTAAAAAAAATCAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGTT CCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGA CCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATC TCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAA CATATCCGTTACTCCTAGTAACAGCGCAGTGCAATAGAATTCCCA



consensusID : consensus_6408#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 522
fasta sequence
                              [GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG-TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG]

[-] EMBL CD134231             [GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGG TTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG]
[-] EMBL CD134328             [                                                                                                                                                                     AAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTTTTCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGT                                                                                                                            ]


>consensus_6408#1 GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCGAA ACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAATCGGTTATATCTGTCGGAAATAAAC GTCCCGTGAATTTTTCCGAGGATTATCAGGACCTAAAAAAAAATCAAGAGTGACCCGACT GTCGCTGATCGTAACGAAAATGCGGGTTTCCACAGTGACTCAACCAGTTTATCAGCTTTG AATTCAATCTCAATACAAGAAAATGAAGACCGTTGGAATGCACATGACCAAATACAGACG AATCATAGTCATCTGTCTGGTCATTCATCTCTTATATCAACTAAACCCAGGTTACAATAC CAAACTCCTTCAGTTCAATCAAAGACAAACATATCCGTTACTCCTAGTGGCGATAGTGAG ATCTCACCACGGTTGCTAAGTTCTTCTGGAACTACTTTGAAATCGAGTTTGAGTAGTCCA GGATCCCCGCCTACAATCACTTCAAATACTCATCTAGTAACG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6408#0      GGAAAGATATGAAATGCTTAAGAACTTGTGCAAACAACAGATCGTGGTAAGTGTGTTTGT 60
consensus_6408#1      ------------------------------------------------------------
                                                                                  

consensus_6408#0      CTTTCGGTTTCTTACATGTCTGAAGATAGATGAGACTCTGAAATCCGAAATCATTAAATT 120
consensus_6408#1      ------------------------------------------------------------
                                                                                  

consensus_6408#0      AAACAATATTATCCGCGTAGTTTCTAGTGAGAAAGAGTAAGTTCTCGGGTCTTCGTCAAC 180
consensus_6408#1      ------------------------------------------------------------
                                                                                  

consensus_6408#0      TACGGCTTATAATTTTAGCTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 240
consensus_6408#1      --GTACTAGTGAGAAAGACTTACTACTGGATGAATTGATAAACAACCATTCTACTTGTCG 58
                           **  * *      ******************************************

consensus_6408#0      AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAAGTAGGTTCCTGTCTGCCTGTAACA 300
consensus_6408#1      AAACGCTGTCAAAGACGAATCTAAACCTTTTCAAAA------------------------ 94
                      ************************************                        

consensus_6408#0      CTTTAGATCGGTTATATCTGTCGGAAANTAACGTNCCGTGAAATTTTCCGAGGGATATCA 360
consensus_6408#1      ------ATCGGTTATATCTGTCGGAAATAAACGTCCCGTGAATTTTTCCGAGGATTATCA 148
                            *********************  ***** ******* **********  *****

consensus_6408#0      GGACCCTAAAAAAAATCA-GAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGGT 419
consensus_6408#1      GGACCTAAAAAAAAATCAAGAGTGACCCGACTGTCGCTGATCGTAACGAAAATGCGGGTT 208
                      *****  *********** *************************************** *

consensus_6408#0      TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 479
consensus_6408#1      TCCACAGTGACTCAACCAGTTTATCAGCTTTGAATTCAATCTCAATACAAGAAAATGAAG 268
                      ************************************************************

consensus_6408#0      ACCGTTGGAGTGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 539
consensus_6408#1      ACCGTTGGAATGCACATGACCAAATACAGACGAATCATAGTCATCTGTCTGGTCATTCAT 328
                      ********* **************************************************

consensus_6408#0      CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 599
consensus_6408#1      CTCTTATATCAACTAAACCCAGGTTACAATACCAAACTCCTTCAGTTCAATCAAAGACAA 388
                      ************************************************************

consensus_6408#0      ACATATCCGTTACTCCTAGTAACAGCGCAGTG----CAATAGAATTCCCA---------- 645
consensus_6408#1      ACATATCCGTTACTCCTAGTGGCGATAGTGAGATCTCACCACGGTTGCTAAGTTCTTCTG 448
                      ********************  *      * *    **  *   ** * *          

consensus_6408#0      ------------------------------------------------------------
consensus_6408#1      GAACTACTTTGAAATCGAGTTTGAGTAGTCCAGGATCCCCGCCTACAATCACTTCAAATA 508
                                                                                  

consensus_6408#0      --------------
consensus_6408#1      CTCATCTAGTAACG 522
                                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)