These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6409#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 343 fasta sequence [CAACGAGACCAAATGGGCAAGGCTCCATCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATAGAATTAAGGAAATCATGGGAGATGCCACAAAAATTCCT-CTTCAGTGTCATACCTAACAGCAAACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGCTTACCTTNCNCGGTCTAGTGCTGCTCGTTGGTTTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT] [+] EMBL CD164608 [CAACGAGACCAAATGGGCAAGGCTCCATCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATAGAATTAAGGAAATCATGGGAGATGCCACAAAAATTCCT CTTCAGTGTCATACCTAACAGCAAACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGCTTACC ] [+] EMBL CD164536 [ AAGGCTCCAGCCTTACAGAGGGATCTAAGCAAGAAAGCCTTTAGTGCAAAAAATTATATATTTAAGGAAATCATGAGAGATGCCACAAAAATTCCTGCTTCAGTGTCTTACCTATCAGCNNACACTGGACACATGACGCGATTTTCCTGGGGATTTGCTNGATAAATAACATATGCATGTGATGGACTACCAGTCNTTACAAACCACACTGTGGGAGTGCTTAGGAAATGGAAAAATGTTCTCCTTNCNCGGTCTAGTGCTGCTCGTTGGTTTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT] consensusID : consensus_6409#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 340 fasta sequence [GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCTCTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAATTCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGTGT] [+] EMBL CD164581 [GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCTCTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAATTCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGGGATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGT ] [+] EMBL CD164577 [ agAAAGC CTCTACT GCAAAAAATTA TAGAATTAA AGAAATCATGAGAGATGCCACA AAAATTCCTCTTGAGTGTCATA CCTAACAGCAAACAC TGGACACATGACGCGATTTTCCTGGGGACTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTGTGGGAGTGCTTATGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGTATCCAAATCTGATTATAAAAATACACATGTGTACATATGTACTGTGTGTGTATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6409#0 CAACGAGACCAAATGGGCAAGGCTCCATC-CTTACAGAG-GGATCTAAGCAAGAAAG--C 56 consensus_6409#1 ---------------GCAAGGGCTCCAGCTCTTACAGAGTGGATCTAAGCAAGAAAAGCT 45 * * ******* * ********* **************** consensus_6409#0 CTTTAGTG--CAAAAAATTAT-AGAATTAAGG--AAATCATGGGAGATGCCACAAAAA-T 110 consensus_6409#1 CTTTAGTGGGCAAAAAATTATTAGAATTAAGGGGAAATCATGAGAGATGCCACANAAAAT 105 ******** *********** ********** ******** *********** *** * consensus_6409#0 TCCTCTTCAGTGTCATACC-TAACAGCAAACAC-TGGACACATGACGCGATTTTCCTGGG 168 consensus_6409#1 TCCTCTTCAGTGTCATACCCTAACAGCAAACACGTGGACACATGACGCGATTTTCCTGGG 165 ******************* ************* ************************** consensus_6409#0 GATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCACCACACACCACACTG 228 consensus_6409#1 GATTTGCTAGATAAATAACATATGCATGTGATGGACTACCAATCATTACAAACCACACTG 225 ********************************************* *** ********* consensus_6409#0 TGGGAGTGCTTAGGAAATGGAAAAATGCTTACCTTNCNCGGTCTAGTGCTGCTCGTTGGT 288 consensus_6409#1 TGGGAGTGCTTAAGAAATGGAAAAATGTTTAAATAAAAAAGTATAATGAAACACGTTAGT 285 ************ ************** *** * ** ** ** * **** ** consensus_6409#0 TTCCAAATCTGATTTTTAGGATACACATGTGTACATNTGTACTGTGTGTGTGTGT 343 consensus_6409#1 ATCCAAATCTGATTTTAAAAATACACATGTGTACATATGTAGTGTGTGTGTGTGT 340 *************** * **************** **** ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||