These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6412#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 350 fasta sequence [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTATATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCGNT] [+] EMBL CD199226 [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTATATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCGNT] [+] EMBL CD199227 [CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTCACTTCGAAGTTAGTTGACAGTTGTTCTGAGTTCCATTTGTTCTTCAATTGTAGAAATGCTGCTCTCGCTTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTTATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGNTTATATTGAGACCTACTGCTACTGAGGCTAC ] consensusID : consensus_6412#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 341 fasta sequence [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATACTGAGACCTATTGCTGCTGAGATACTGCACACTATCGAGG] [-] EMBL CD061323 [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATACTGAGACCTATTGCTGCTGAGATACTGCACACTATCGAGG] [-] EMBL CD061318 [GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATATTGAGACCTATTGCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGATAGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTCATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAGTGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTATATTGAGACCTATTGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6412#0 -----CCACGTTTCAAATCTGTACAGTAGGACTGTCTCGACGTTCGTATTGAAGATTCTC 55 consensus_6412#1 GTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCGTTGTTTATATTGAGACCTATT 60 ** * *** * * * * ** ** *** ****** * * consensus_6412#0 ACTTC-GAAGTTAGT----TGACAGTTGTTCTGAGTTCCATTTGTTCTTCAAT-TGTAGA 109 consensus_6412#1 GCTGCTGAGGATACTGCTACACTAGTCGTCTTCTCCTGCATTTGTTGTTGCGTATGTGAT 120 ** * ** * ** * *** ** * * ******** ** * *** consensus_6412#0 AATGCTGCTCTCGC-TTTGCCAATCCTCGCCTTCACATCTGAATCCGATCCTCCTTGTTT 168 consensus_6412#1 AGAAGAGCCAGATCATCTGCGAAGTCTAAATCGTCCAGCTGCATCTGATCCACCGTGTTC 180 * ** * * *** ** ** ** *** *** ***** ** **** consensus_6412#0 ATCAATGATGCTTCCCAGGTACGTGAATATTTCCATCTCTTCCAGAGCTTCTCCGTCAAG 228 consensus_6412#1 ATCAATGATGCTGCCCAGATATGTAAATGTTTTCGCATCATGCAAAGCTTCTCCGTCAAG 240 ************ ***** ** ** *** *** * ** * ** *************** consensus_6412#0 TGTAATTCGATTGGTGCATGCCGTATTGTATCTGAGAGTCTTGCTTTTCCCTTTGTTTAT 288 consensus_6412#1 TGTAATTCGATTGGTGCATATTGTATTGTATCGGAGAATCTTGCTTTTCCCTTTGTTTAT 300 ******************* ********** **** ********************** consensus_6412#0 ATTGAGACCTACTGCTACTGAGGCTACTGTTACACTGGTCGTCTTCTTCTGCANTTGTCG 348 consensus_6412#1 ACTGAGACCTATTGCTGCTGAGA-TACTGC-ACACTA-TCGAGG---------------- 341 * ********* **** ***** ***** ***** *** consensus_6412#0 NT 350 consensus_6412#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||