cluster # 642

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Schistosoma mansoni
cluster # 642 cluster # 642 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_642#0 length = 422 sequences # 1

consensus_642#1 length = 190 sequences # 1

consensusID : consensus_642#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 422
fasta sequence

                              [CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCTGTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTTGAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTTACAAATATATATATATTACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAACTGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATTTTAAAAAAAGATTTTTACATAGCACATCATTTACTGTTATTATATGAAGAAAATAGCAGATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTTTTTTG]

[+] EMBL AW063003             [CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCTGTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTTGAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTTACAAATATATATATATTACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAACTGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATTTTAAAAAAAGATTTTTACATAGCACATCATTTACTGTTATTATATGAAGAAAATAGCAGATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTTTTTTG]




>consensus_642#0
CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCT
GTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTT
GAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTT
ACAAATATATATATATTACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAACT
GTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATTT
TAAAAAAAGATTTTTACATAGCACATCATTTACTGTTATTATATGAAGAAAATAGCAGAT
GTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTTTTT
TG

consensusID : consensus_642#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [TTTTTTTTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTATGTGTACTTGCCATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTANGAATANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAAAAGAAT]

[+] EMBL AI394817             [TTTTTTTTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTATGTGTACTTGCCATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTANGAATANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAAAAGAAT]




>consensus_642#1
TTTTTTTTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTATGTGTAC
TTGCCATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTAN
GAATANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAAT
GAAAAAGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_642#0      CCTGTCCTTTCCAAACTGAAACTGATACGATTGAAACGTTACGTAAATAAACTCCTTGCT 60
consensus_642#1      ------------------------------------------------------------
                                                                                 

consensus_642#0      GTAAAGTGTAAACTATTACAAATTTGAATAATATATTTGTAAATTCCAGTGAATGAATTT 120
consensus_642#1      ------------------------------------------------------------
                                                                                 

consensus_642#0      GAAGTAAATCTAACGTTTCGCCTGGCAATCCGGTCCAAGCTTAGACCTCTCTGAGATTTT 180
consensus_642#1      ------------------------------------------------------TTTTTT 6
                                                                             ****

consensus_642#0      ACAAATATATATATATT-ACTATTTATGTGTCTTTACATCAATCTCAGCGTCTCAAAAAC 239
consensus_642#1      TTTTTTTTTTTTACGTTGAATATATATATNTATTTACTTGCATATTA-TGTGTACTTGCC 65
                          * * * **  ** * *** *** * * ***** *  ** * *  ** *      *

consensus_642#0      TGTGAAACTATTCACTCTAATTTAGATGAAAGTTCTTATATATTACAAAATATGTTGATT 299
consensus_642#1      ATCAAAATTACCCCACCCCAACAAATTTAAGGGTTCTAAACATAAGGAAATCTAN-GAAT 124
                         *** **  *   *  *   *  * ** * *  ** * ** *  **** *   ** *

consensus_642#0      TTAAAAAAAGATTTTTACATAGCACATCAT-TTACTGTTATT-ATATGAAGAAAATAGCA 357
consensus_642#1      ANGGTGAATATTCAAGGAATAAACCATCATATCATGATCATTGATATAAGTATAATGAAA 184
                           **   *      ***   ****** * *   * *** **** *  * ***   *

consensus_642#0      GATGTTCAAACATATTTATTCAAATATTATATTATCTTAATTTATAAAAGTATAAATTTT 417
consensus_642#1      AAGAAT------------------------------------------------------ 190
                      *   *                                                      

consensus_642#0      TTTTG 422
consensus_642#1      -----