cluster # 6422

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Schistosoma mansoni
cluster # 6422 cluster # 6422 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6422#0 length = 654 sequences # 3

consensus_6422#1 length = 294 sequences # 1

consensusID : consensus_6422#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 654
fasta sequence

                              [AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAATAAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCATCGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA]

[+] EMBL AW017308             [AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAATAAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCATCGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA]
[+] EMBL CD083498             [                                                 cgaggAATAATAAAGTCAATGATTTGAAT AAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTA                                                                                                                                               ]
[-] EMBL CD140023             [                                                                                                                                                                                                                                                                                                                                                                                                                                  CCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATGAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTGTTTGATCCACTTGGGCATCGTCAATTATGCCCACTCAATATAAATCAATCAA                       ]




>consensus_6422#0
AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAAT
AAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGT
TTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGA
TTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGT
CACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACT
ATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGA
TGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACC
AAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGAT
AATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTAAGT
GATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCATCGT
CAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA

consensusID : consensus_6422#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 294
fasta sequence

                              [TCCGTTTTTATTTAGCCCGTACAGTTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCTTCTGCTACAAAACGAGATACGATCACTTTAAACTCATTCATTCTGTTCACTTTTTCTACTAGCTGTTGTTGTTGTTTCTTTTTCTAACTAGACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT]

[+] EMBL CD196122             [TCCGTTTTTATTTAGCCCGTACAGTTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCTTCTGCTACAAAACGAGATACGATCACTTTAAACTCATTCATTCTGTTCACTTTTTCTACTAGCTGTTGTTGTTGTTTCTTTTTCTAACTAGACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT]




>consensus_6422#1
TCCGTTTTTATTTAGCCCGTACAGTTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGA
ATAGATACTTCTCTAAGACCATCTTCTGCTACAAAACGAGATACGATCACTTTAAACTCA
TTCATTCTGTTCACTTTTTCTACTAGCTGTTGTTGTTGTTTCTTTTTCTAACTAGACATC
TTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGA
AGTCATTCCCATCGACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6422#0      AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAAT 60
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      AAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGT 120
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      TTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGA 180
consensus_6422#1      ------------------------------------TCCGTTTTTATTTAGCCCGTACAG 24
                                                            ** **  *   *    *     

consensus_6422#0      TTTTTATCTTATCATCCGTCGTCGTCATCA--TCGATTTCAGGAAATTCCAGGATTACTA 238
consensus_6422#1      TTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCT 84
                      ** * **  *   *    * **  * *  *  **** *  *      ** * **  *   

consensus_6422#0      GTCAC-ACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAA 297
consensus_6422#1      TCTGCTACAAAACGAGATACG---ATCACTTTAAACTCATTCATTCTGTTCACTTTTTCT 141
                          * *****   ***  **   ***     ***  * *** *         * *    

consensus_6422#0      ACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAA 357
consensus_6422#1      ACTAGCTGT-TGTTGT-TGTTTCTTTTTCTAAC-----TAGACATCTTGATCGTCATGAA 194
                      ****   ** *  * * * *** ****  * *       * *******************

consensus_6422#0      AGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCG 417
consensus_6422#1      AGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCG 254
                      ************************************************************

consensus_6422#0      ACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGT 477
consensus_6422#1      ACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT-------------------- 294
                      ****** *********************************                    

consensus_6422#0      GATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTA 537
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      AGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCAT 597
consensus_6422#1      ------------------------------------------------------------
                                                                                  

consensus_6422#0      CGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA 654
consensus_6422#1      ---------------------------------------------------------