These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6422#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 654 fasta sequence [AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAATAAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCATCGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA] [+] EMBL AW017308 [AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAATAAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCATCGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA] [+] EMBL CD083498 [ cgaggAATAATAAAGTCAATGATTTGAAT AAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGTTTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGATTTTTATCTTATCATCCGTCGTCGTCATCATCGATTTCAGGAAATTCCAGGATTACTAGTCACACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAAACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTA ] [-] EMBL CD140023 [ CCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGTGATAATGAAAGTGCCGAATTTAGTGATGTTACTAATGAACATGATAAAAAATATATATTAAGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTGTTTGATCCACTTGGGCATCGTCAATTATGCCCACTCAATATAAATCAATCAA ] consensusID : consensus_6422#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 294 fasta sequence [TCCGTTTTTATTTAGCCCGTACAGTTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCTTCTGCTACAAAACGAGATACGATCACTTTAAACTCATTCATTCTGTTCACTTTTTCTACTAGCTGTTGTTGTTGTTTCTTTTTCTAACTAGACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT] [+] EMBL CD196122 [TCCGTTTTTATTTAGCCCGTACAGTTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCTTCTGCTACAAAACGAGATACGATCACTTTAAACTCATTCATTCTGTTCACTTTTTCTACTAGCTGTTGTTGTTGTTTCTTTTTCTAACTAGACATCTTGATCGTCATGAAAGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCGACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6422#0 AAACTTAAAACTGCTTGCAATATCATGGCGAATAAATCTACTTTGGCTTCAACAAATAAT 60 consensus_6422#1 ------------------------------------------------------------ consensus_6422#0 AAAGTCAATGATTTGAATAAAATACCTGACAATATTTTACGCCGATTAGCCCTTGTTGGT 120 consensus_6422#1 ------------------------------------------------------------ consensus_6422#0 TTAGGTCGAACTCGTTTAACCCGTTTAGCTGGTCTAGGCGGTTGGAAACAATTTGCTGGA 180 consensus_6422#1 ------------------------------------TCCGTTTTTATTTAGCCCGTACAG 24 ** ** * * * consensus_6422#0 TTTTTATCTTATCATCCGTCGTCGTCATCA--TCGATTTCAGGAAATTCCAGGATTACTA 238 consensus_6422#1 TTATCATGGTGGAAAGTTTTGTTTTAAATACCTCGAATAGATACTTCTCTAAGACCATCT 84 ** * ** * * * ** * * * **** * * ** * ** * consensus_6422#0 GTCAC-ACAAATGAAGAAGCGGATATCGTCAGAAATGCTTTCGTCACTGGTGATCTAGAA 297 consensus_6422#1 TCTGCTACAAAACGAGATACG---ATCACTTTAAACTCATTCATTCTGTTCACTTTTTCT 141 * ***** *** ** *** *** * *** * * * consensus_6422#0 ACTATTCGTATACTTTATATTTATTTTCGTGATGTTTACAAACATCTTGATCGTCATGAA 357 consensus_6422#1 ACTAGCTGT-TGTTGT-TGTTTCTTTTTCTAAC-----TAGACATCTTGATCGTCATGAA 194 **** ** * * * * *** **** * * * ******************* consensus_6422#0 AGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCG 417 consensus_6422#1 AGATGTTATTTAGAAAATAACAGTAATCATCATAATAAACTAATGAAGTCATTCCCATCG 254 ************************************************************ consensus_6422#0 ACCAAGTTATCTGGTAAACAGCATCATCCATTTTTATTGTCCTACTTAGATTATCATTGT 477 consensus_6422#1 ACCAAGCTATCTGGTAAACAGCATCATCCATTTTTATTGT-------------------- 294 ****** ********************************* consensus_6422#0 GATAATGAAAGTGCCGAATTTAGTGATGTTACTAATAAACATGATAAAAAATATATATTA 537 consensus_6422#1 ------------------------------------------------------------ consensus_6422#0 AGTGATAAAATTCAAGCATGGATATCTTCTGGTAATCAATTATTTGATCCACTTGGGCAT 597 consensus_6422#1 ------------------------------------------------------------ consensus_6422#0 CGTCAATTGTGCCCACTCAATATAAATCAATCAATAAACCTAATGAAAAGTGTACAA 654 consensus_6422#1 --------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||