cluster # 6424

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Schistosoma mansoni
cluster # 6424 cluster # 6424 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6424#0 length = 562 sequences # 1

consensus_6424#1 length = 468 sequences # 2
consensus_6424#2 length = 389 sequences # 1

consensusID : consensus_6424#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 562
fasta sequence

                              [CTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCCGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTATACGGGAATGTTCAGGCGACAATGCGTCAATCAGTTGAGAACACAAACACCACAAGAACATAGGCCAATAATCGAAGTGAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACAAGCAATAGTACAACCACCGACAATTAACACTGAGACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTTGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGAACAGTCACGATAAATTCAGAAACACAAACACCACAAGAACATAGGCCAATAATCGAAGTGAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACAAGCAATAGTACAACCACCGACTATTAACACTGAGACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTTGCCACCAAAGTATT]

[+] EMBL CD153293             [CTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCCGTATTCCACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTATACGGGAATGTTCAGGCGACAATGCGTCAATCAGTTGAGAACACAAACACCACAAGAACATAGGCCAATAATCGAAGTGAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACAAGCAATAGTACAACCACCGACAATTAACACTGAGACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTTGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGAACAGTCACGATAAATTCAGAAACACAAACACCACAAGAACATAGGCCAATAATCGAAGTGAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACAAGCAATAGTACAACCACCGACTATTAACACTGAGACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTTGCCACCAAAGTATT]




>consensus_6424#0
CTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCCGTATTCC
ACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTATACGGGAATG
TTCAGGCGACAATGCGTCAATCAGTTGAGAACACAAACACCACAAGAACATAGGCCAATA
ATCGAAGTGAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAA
AAACTACAAGCAATAGTACAACCACCGACAATTAACACTGAGACTCAGACGATGGTAGAG
AGACCACCACCGGTTATCTTGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGAACA
GTCACGATAAATTCAGAAACACAAACACCACAAGAACATAGGCCAATAATCGAAGTGAAA
GATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACAAGCA
ATAGTACAACCACCGACTATTAACACTGAGACTCAGACGATGGTAGAGAGACCACCACCG
GTTATCTTGCCACCAAAGTATT

consensusID : consensus_6424#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 468
fasta sequence

                              [ACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTGGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGATCAGTCACGATAAATTCAGAAACACAAACTCCACACGAACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCTCGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATCTGACGATGTTTGTTTGCAAACCTATGAAGTAACAGTACAACCTGTCAAACCCGTTCCTCAGGCGTTCTCTCGAGCTCCGCAAGTCGAACATAAGCAAACACAAGCAGAATGGCTAAAGACTAAGACAAAAACATTTGATATACAAGCACAATCAGGTATAGTAGTCAAGACACAGTCCACACAAACTATTCTAGAAGAACGACCAATGTTCCATACTGCAGACGTCAGTGTGATTCACAGTGAAAAATCACCT]

[-] EMBL CD111751             [ACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTGGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGATCAGTCACGATAAATTCAGAAACACAAACTCCACACGAACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCTCGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATCTGACGATGTTTGTTTGCAAACCTATGAAGTAACAGTACAACCTGTCAAACCCGTTCCTCAGGCGTTCTCTCGAGCTCCGCAAGTCGAACATAAGCAAACACAAGCAGAATGGCTAAAGACTAAGACAAAAACATTTGATATACAAGCACAATCAGGTATAGTAGTCAAGACACAGTCCACACAAACTATTCTAGAAGAACGACCAATGTTCCATACTGCAGACGTCAGTGTGATTCACAGTGAAAAATCACCT]
[+] EMBL CD065555             [                                                                         cggCAGTCACGATAAATTCAGAAACACAAACTCCACACGAACCGAAAATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCACGTACACACAGTCAACAAGAAACTTCAAGCTGTGGTATATCATCCATCTGACGATGTTTGTTTGCAAACCGATGAAGTAACAGTACAACCTGTCAAACCCGTTCCTCAGGCGTTCTCTCGAGCTCCGCAAGTCGAACATAAGCAAACACAAGCAGAATGGCTAAAGACTAAGACAAAAACATTTGATATACAAGCACAATCAGGTATAGTAGTCAAGACACAGTCCACACAAACTATTCTAG                                                           ]




>consensus_6424#1
ACTCAGACGATGGTAGAGAGACCACCACCGGTTATCTGGCCACCAAAAGTATTCGACGTC
CAAACACAATCAGGATCAGTCACGATAAATTCAGAAACACAAACTCCACACGAACCGAAA
ATAATCCCAGCTATAAAGGATGCGAGTGTGATTCATGAACCACATCTCGTACACACAGTC
AACAAGAAACTTCAAGCTGTGGTATATCATCCATCTGACGATGTTTGTTTGCAAACCTAT
GAAGTAACAGTACAACCTGTCAAACCCGTTCCTCAGGCGTTCTCTCGAGCTCCGCAAGTC
GAACATAAGCAAACACAAGCAGAATGGCTAAAGACTAAGACAAAAACATTTGATATACAA
GCACAATCAGGTATAGTAGTCAAGACACAGTCCACACAAACTATTCTAGAAGAACGACCA
ATGTTCCATACTGCAGACGTCAGTGTGATTCACAGTGAAAAATCACCT

consensusID : consensus_6424#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [GGCACTGTCCCCTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTAGTAGGCAAGAAGCTTCAGGCGACAATGCGTCAATCAGTTGAGAACACGAGCACACAGGCTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTTCCAGAGGAACGGCCAGTATTCCACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACC]

[-] EMBL CD151643             [GGCACTGTCCCCTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTAGTAGGCAAGAAGCTTCAGGCGACAATGCGTCAATCAGTTGAGAACACGAGCACACAGGCTGATCCGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTTCCAGAGGAACGGCCAGTATTCCACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACC]




>consensus_6424#2
GGCACTGTCCCCTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCCAC
ACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTAGTAGGCAAGAAGCTT
CAGGCGACAATGCGTCAATCAGTTGAGAACACGAGCACACAGGCTGATCCGATGGCTCAA
GTCCCTACTGTACTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTTCCA
GAGGAACGGCCAGTATTCCACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCT
TCATTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGTACTGTCCACTGTGCACAG
TCAGTTCAGACTATTCCAGAGGAACGACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6424#0      CTGGTACTGTCCACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCCGTATTCC 60
consensus_6424#1      --------------------------ACTCAGACGATGGTAGAGAGACCACCACCGGTT- 33
consensus_6424#2      --GGCACTGTCCCCTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACCAGTATTCC 58
                                                  ****** **   ****  ** ***     *  

consensus_6424#0      ACACTGTCAATGTAGGAGTAGATCTTACTGGGAAATTACAGTCCGTATTATACGGGAATG 120
consensus_6424#1      ATCTGGCCACC--AAAAGTA---TTCGACGTCCAAACACAATCAGGATCA---------- 78
consensus_6424#2      ACACTGTCAGTGTAGGACTTGATCATACTGAGAAATCACCTTCATTAGTAGGCAAGAAGC 118
                      *    * **    *  * *          *   **  **  **   *  *          

consensus_6424#0      TTCAGGCGACAATGCGTCAATCAGTTGAGAACACAAACACCACAAGAACATAGGCCAATA 180
consensus_6424#1      -----GTCACGATAAAT-------TCAGAAACACAAACTCCACACGAACCGAAAATAATC 126
consensus_6424#2      TTCAGGCGACAATGCGTCAATCAGTTGAGAACACGAGC---------ACACAGGCTGATC 169
                           *  ** **   *       *    ***** * *         **  *     ** 

consensus_6424#0      ATCGAAGTGAAAGATTTGATTACACAAC-ACGAGAAACGTCCAGAGCCAATTGTACACAA 239
consensus_6424#1      CCAGCTATAAAGGATGCGAGTGTGATTC-ATGAACCACATCTCGTACACACAGTCAACAA 185
consensus_6424#2      -CGATGGCTCAAGTCCCTACTGTACTACCAAAAACCACGTTCGATGTTGTGACTCAATCT 228
                                * *     * *      * *  *   ** *             *  *   

consensus_6424#0      AAAACTACAAGCAATAGTACAACCACCGACAATTAACACTGAGACTCAGACGATGGTAGA 299
consensus_6424#1      GAAACTTCAAGCTGTGGTATATCATCCATCTGACGATGTTTGTTTGCAAACCTATGAAGT 245
consensus_6424#2      GGTACTGTTC-CAGAGGAACGGCCAGTATTCCACACTGTCAGTGTAGGACTTGATCATAC 287
                         ***     *    * *   *                                     

consensus_6424#0      GAGACCACCACCGGTTA--TCTTGCCACCAAAAGTATTCGACGTCCAAACACAATCAGGA 357
consensus_6424#1      AACAGTACAACCTGTCAAACCCGTTCCTCAGGCGTTCTCTCGAGCTCCGCA-AGTCGAAC 304
consensus_6424#2      TGAGAAATCACCT-TCA----TTACCAAAAACCACGTTCGATGTTGTGACTCAATCTGGT 342
                            *  ***  * *        *   *       **          *  * **    

consensus_6424#0      ACAGTCACGATAAATTCAGA-AACACAAACACCACAAGAACATAGGCCAATAATCGAAGT 416
consensus_6424#1      ATAAGCA-AACACAAGCAGA-ATGGCTAAAG--ACTAAGACAAAAACATTTGATATACAA 360
consensus_6424#2      ACTGTCC-ACTGTGCACAGTCAGTTCAGACTATTCCAGAGGAACGACC------------ 389
                      *    *          ***  *   *  *     * *    *    *             

consensus_6424#0      GAAAGATTTGATTACACAACACGAGAAACGTCCAGAGCCAATTGTACACAAAAAACTACA 476
consensus_6424#1      GCACAATCAGGT-ATAGTAGTCAAGACACAGTCCACACAAACTATTCTAGAAGAACGAC- 418
consensus_6424#2      ------------------------------------------------------------
                                                                                  

consensus_6424#0      AGCAATAGTACA-ACCACCGACTATTAACACTGAGACTCAGACGATGGTAGAGAGACCAC 535
consensus_6424#1      --CAATGTTCCATACTGCAGAC----GTCAGTGTGATTCACA-----GT-GAAAAATCAC 466
consensus_6424#2      ------------------------------------------------------------
                                                                                  

consensus_6424#0      CACCGGTTATCTTGCCACCAAAGTATT 562
consensus_6424#1      CT------------------------- 468
consensus_6424#2      ---------------------------