cluster # 6430

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6430 cluster # 6430 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6430#0 length = 455 sequences # 2

consensus_6430#1 length = 234 sequences # 2

consensusID : consensus_6430#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 455
fasta sequence

                              [ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGTGTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAATTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTATTATTATTATTACTAAGGGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTTTTTCGTTCTAAATCTTTTTTCAATTTTCAATAAATATTACAACGGTTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGTTGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT]

[+] EMBL AI764943             [ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGTGTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAATTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTATTATTATTATTACTAAGGGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTTTTTCGTTCTAAATCTTTTTTCAATTTTCAATAAATATTACAACGGTTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGTTGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT]
[-] EMBL CD145803             [                                                                                                        TTTCACTTCTNTGAATTAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGAC ATCAGTGTTTGTCTTAATTTACTCTTTTGT GCTTAGC GTATTTCTTCTTCCAGTTACAATATT CC   TTATTATTATTATTATTACTAA TGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATACCAGGAATTTATTTCGTTCTAAATCTTTTTTCAATTTTCATTAATTA                                                                                                            ]




>consensus_6430#0
ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGT
GTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAAT
TAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAA
TTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTA
TTATTATTATTACTAAGGGGTCATCACATTAGTTACTTTCAACTTTTTATTTTGGCTATA
CCAGGAATTTTTTTCGTTCTAAATCTTTTTTCAATTTTCAATAAATATTACAACGGTTAA
GTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGTTGTG
TGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT

consensusID : consensus_6430#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 234
fasta sequence

                              [ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTATTCAGTTCATCTTTATAATTGAATGTGAGCATTGACAATATTTCAATATGATATGCATAATTAATATTACTCATGAATACAATTTACTACAAATAAT-AAAGACATTTAACTAACATTCAATTAAAATAATGAATT-AAGTTAGTTTATGTTCATAATTCAGATAAAGTGTATTTTGTATGGT-GTGTGCATGTGTTCGTG]

[+] EMBL AI390093             [ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTATTCAGTTCATCTTTATAATTGAATGTGAGCATTGACAATATTTCAATATGATATGCATAATTAATATTACTCATGAATACAATTTACTACAAATAAT AAAGACATTTAACTAACATTCAATTAAAATAATGAATT AAGTTAGTTTATGTTCATAATTCAGATAAAGTGTATTTTGTATGGT GTGTGCATGTG      ]
[+] EMBL SMAA69227            [                                                                                                                       TTTCTCCAAATAATAAAAGACATTTAACTAACATTCAATTAAAATAATGAATTAAAGTTAGTTTATGTTC TAATTCAGATAAAGTGTATTTTGTATGGTGGTGTGTATcgtttcgtg]




>consensus_6430#1
ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTATTCAGTTCATCTTTATAATTGAAT
GTGAGCATTGACAATATTTCAATATGATATGCATAATTAATATTACTCATGAATACAATT
TACTACAAATAATAAAGACATTTAACTAACATTCAATTAAAATAATGAATTAAGTTAGTT
TATGTTCATAATTCAGATAAAGTGTATTTTGTATGGTGTGTGCATGTGTTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6430#0      ATTAAAGTTAGTTGATGTTCTAATTCAGATAAAGTGTATTTTGTATGGTTGTGTGTATGT 60
consensus_6430#1      ------------------------------------------------------------
                                                                                  

consensus_6430#0      GTTTGCGTATAGTCTGTTCGCTTACCTATCTAGTCGTTGTTGTATTTCACTTCTTTGAAT 120
consensus_6430#1      ------------------------------------------------------------
                                                                                  

consensus_6430#0      TAAATCTCTCCCTTGTTCTACAATCTTTTTCTTTTTTCAGACAATCAGTGTTTGTCTTAA 180
consensus_6430#1      ------------------------------------------------------------
                                                                                  

consensus_6430#0      TTTACTCTTTTGTGGCTTAGCGGTATTTCTTCTTCCAGTTACAATATTGCCTTATTATTA 240
consensus_6430#1      ------------------------ATCTTATTATTTCACTATAAAGTTTCATTGTCTTTA 36
                                              ** *  *  *     ** **  ** * ** *  ***

consensus_6430#0      TTATTATTATTACTAAGGGGTCATCACAT-TAGTTACTTTCAACTTTTTATTTTGGC-TA 298
consensus_6430#1      TTCAGTTCATCTTTA-----TAATTGAATGTGAGCATTGACAATATTTCAATATGATATG 91
                      **    * **   **     * **   ** *    * *  ***  *** * * **   * 

consensus_6430#0      TACCAGGAATTTTTTTCGTT--CTAAATCTTTTTTCAATTTTCAATAAATATTACAACGG 356
consensus_6430#1      CATAATTAATATTACTCATGAATACAATTTACTACAAATAATAAAGACATTTAACTAACA 151
                       *  *  *** **  ** *      *** *  *   ***  * ** * ** * ** *   

consensus_6430#0      TTAAGTCTTGTTGCAACGTCATTAGCTGGCCTTTCTACGACTATATCATTCGAGCATAGT 416
consensus_6430#1      TTCAAT--TAAAATAATGAATTAAGTTAGTTTATGTTC-ATAATTCAGATAAAGTGTA-T 207
                      ** * *  *     ** *   * ** * *  * * * * *  **     *  **  ** *

consensus_6430#0      TGTGTGTGAGTGTGTGAGGGTTGTTTGTAACTTTTGAGT 455
consensus_6430#1      TTTGTATG-GTGTGTGCATGT-GTTCGTG---------- 234
                      * *** ** *******   ** *** **