These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6433#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 625 fasta sequence [CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGATATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCG-AACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTGNACCA-GTACAAATCCA] [+] EMBL CD162001 [CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGATATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCG AACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATC ] [+] EMBL CD125349 [ GACGATCAGCTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAATTAATTACCAGTCGAAACTGAGGATTTGCCCAGTGACTTGCACGGATATATGGTCGACCGCCACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGAATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAGGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTGNACCA GTACAAATCCA] [+] EMBL BG931086 [ gatatatGGGGGGTCTGTTAAGTGACAAATATCCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTTTCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCTCTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTAAACGGACTAAACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAACCAAATGCTTG ACCAGGTACAAA ] consensusID : consensus_6433#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [TGATCGTCGTCGTCTACGTCATCGTGCTCCTCGACTTGCATCTATTGGATTTGTTTTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCCACGTGGGTTTTTTGAAACTAACCATCATATAGCTAGTGTAGATTTTTTCTTCGATTCTAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTACATATGCAGCTGATCAACCAGGTGAATTTTTATTACGTTTATTATTTGACAATCCGGATAGAATTTGCGAATCTACATTAGAGCGTGTAGAACTTAGTGGTTTAGCTGCAACTGGACCAGAGCCTGATCCAAACTATGAATTATTTCAGCCACGTCTTAGACGATTATTTCAT] [+] EMBL CD147399 [TGATCGTCGTCGTCTACGTCATCGTGCTCCTCGACTTGCATCTATTGGATTTGTTTTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCCACGTGGGTTTTTTGAAACTAACCATCATATAGCTAGTGTAGATTTTTTCTTCGATTCTAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTACATATGCAGCTGATCAACCAGGTGAATTTTTATTACGTTTATTATTTGACAATCCGGATAGAATTTGCGAATCTACATTAGAGCGTGTAGAACTTAGTGGTTTAGCTGCAACTGGACCAGAGCCTGATCCAAACTATGAATTATTTCAGCCACGTCTTAGACGATTATTTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6433#0 CAACTGTCCGGATTGTCAAATAATAAACGTAATAAAAATTCACCTGGTTGATCAGCCGAT 60 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 ATAAAACAAATCCAATAGATGCAAGTCGAGGAGCACGATGACGTAGACGACGACGATCAG 120 consensus_6433#1 ------------------------------------------------------------ consensus_6433#0 CTTGCATTAGAGCAATGACGGTTGTAGCGAACCCATCAGGATCATTTGGATCCGGTGAAT 180 consensus_6433#1 ------------------TGATCGTCGT-----CGTCTACGTCATCGTGCTCC--TCGAC 35 * * ** * * ** **** * *** * * consensus_6433#0 TAATTACCAGTCGAACTGTTGATTTGCCCAGCGACTTGCACGGATATATGGTCGACCGCC 240 consensus_6433#1 TTGCATCTATTGGATTTGTT--TTATATCGGCTTCCAGCTGGAGCTAATCCACCAATGCC 93 * * * * ** **** ** * ** * ** * ** * * *** consensus_6433#0 ACATGACACACCTCGAAGCCATCGACCACGTAAGTGAACTGATGGGAAATTATGTAAGGA 300 consensus_6433#1 ACGTGG-GTTTTTTGAAACTAACCATCATATAGCTAG--TGTAGATTTTTTCTTCGATTC 150 ** ** * *** * * * * ** ** * ** * ** * * consensus_6433#0 ATGATAAGCACTAGAAGATTTAGAAATCACTGGAGGTGGCTCTGTTAG-GTGACAAATAT 359 consensus_6433#1 TAGAGAAGTTGTTAAACGTTTAAAATTAACACCAGGTCATTATCTTCTTGTTCCATGTAC 210 ** *** * ** **** ** * ** **** * * ** ** ** ** consensus_6433#0 CCAAATAGTCGAAATTGGCAATAAAATCTTCAAGTGACATCCAAAACTCTTCTTGAGCTT 419 consensus_6433#1 ATATGCAGCTGAT-CAACCAGGTGAATTTTTA--TTACGTTT---ATTATTTGACAATCC 264 * ** ** ** *** ** * * ** * * * ** * consensus_6433#0 TCACCAAGCCAACTTTTAAACGGTCTTGTGGTGGAAGACTAAGCCATTCTGTTGAACCCT 479 consensus_6433#1 GGATAGAATTTGCGAATCTACATTAGAGCG-TGTAGAACTTAGTGGTTTAGCTGCAACTG 323 * * * * ** * * * ** * *** ** ** * ** * * consensus_6433#0 CTGACCACGCACCTGTCCAGTCCACACGAACTGAAGGCCATAAATTTCTTANACGGACTA 539 consensus_6433#1 --GACCAGAGCCTGATCCAAACTAT--GAATT--ATTTCAGCCACGTCTTAGACG-ATTA 376 ***** * **** * * *** * * ** * ***** *** * ** consensus_6433#0 AACGAAGTAAACGACTTCCTGATGCATCCGTCAGTCGAAGCTTCCGACAATCTGTTAAAC 599 consensus_6433#1 TTTCAT------------------------------------------------------ 382 * consensus_6433#0 CAAATGCTTGNACCAGTACAAATCCA 625 consensus_6433#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||