These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6435#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGCAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA] [+] EMBL CD135759 [TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGCAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA] consensusID : consensus_6435#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 361 fasta sequence [TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGTGGNNNNNNNNNNNNNN] [+] EMBL CD146658 [TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGTGGNNNNNNNNNNNNNN] [+] EMBL CD133006 [ GTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACAACCGAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACCGAGGAGACGAACCAC ] consensusID : consensus_6435#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCGACTCGGTGCCTGAAGATGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACTTGTCAGTGTAGTAGGAGGTGGTGGCTCGATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACG] [-] EMBL CD141046 [AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCATGCTGGTCGACTCGGTGCCTGAAGATGTCGGTGTGGTTCGCCTCCTCGGTCTTCCACTTCGTCTGTGTCTCTTTCCATACTTGTCAGTGTAGTAGGAGGTGGTGGCTCGATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACACCTGGAGAGGAGTACGTGAACGTGACTGACAAATTCGGAAGAGTGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6435#0 TGGGCGAAACGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAG 60 consensus_6435#2 ----------------------AGTGTAGTAGGAGGTGGTGTCGGTCTCCTCGGTTGTCA 38 consensus_6435#1 -----------------TGACAAGTATGGAAAGAGACACAGACGAAGTGGGAGACCGAGG 43 ** * * * * * ** consensus_6435#0 TGGTGGCTCGACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAA 120 consensus_6435#2 TGCTGG-TCGACTCGGTGCCTGAAGATGTCGGTGTGGT----TCGCCTCCTCGGTCT--T 91 consensus_6435#1 AGGCGAACCACACCGACATCTTCAGGCACCGAGTCGAC-CAGCATGACAACCGAGGAGAC 102 * * * * ** ** * consensus_6435#0 CGACAACACCTGGAGAGGAGTACGTGAACGTGACGGACAAATTCGGAAGAGTGGTGGCTC 180 consensus_6435#2 CCACTTCGTCTGTGTCTCTTTCCAT--ACTTGTCAGTGTAGT---AGGAGGTGGTGGCTC 146 consensus_6435#1 CGACACCACCTCCTACTGCACTGACAAGTATGGAAAGAGACACAGACGAAGTGGAAGACC 162 * ** * ** ** * **** * * consensus_6435#0 GACACCGACGTAGGAGGAGGCGACAAACCACAGTCGGACCATTGGGCGAAACGACAACAC 240 consensus_6435#2 GATACAGGCGAAGGAGGAAGCGACAACCGAGAGTCGGTCCACCAGGCGAAATGACAACAC 206 consensus_6435#1 GA-GGAGGCGAACCAC--ACCGACA-TCTTCAGGCACCGAGTCGACCAGCATGACAAC-C 217 ** * ** * * ***** * ** * * * ****** * consensus_6435#0 CTGGAGAGGAGTACGTGAACGTG----ACTGACAAATTCGGAAGAGTGGTGGCTCGACAC 296 consensus_6435#2 CTGGAGAGGAGTACGTGAACGTG----ACTGACAAATTCGGAAGAGTGGTGGCTCGACAC 262 consensus_6435#1 GAGGAGACCGACACCACCTCCTACTACACTGACAAGTATGGAAAGAGACACAGACGAAGT 277 ***** ** * * ******** * **** *** consensus_6435#0 CGACGCAGGAGGAGGCGA--CAAACCACAGTCG--GACCATTGGGCGAAACGACA--ACA 350 consensus_6435#2 CGACGTAGGAGGAGGCGA--CAAACCACAGTCG--GACCATTGGGCGAAACGACA--ACA 316 consensus_6435#1 GGAAGACCGAGGAGGCGAACCACACCGACATCTTCAGGCACCGAGTCGACCAGCATGACA 337 ** * ********** ** *** ** ** * * * * ** *** consensus_6435#0 CCTGGAGAGGAGAAGACGAACCACTCTCGGACCACTGGGCGAA 393 consensus_6435#2 CCTGGAGAGGAGTACGTGAACGTGACG---------------- 343 consensus_6435#1 ACCGAGGTGGNNNNNNNNNNNNNN------------------- 361 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||