These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTCGGTTCATCATTTGTT] [+] EMBL CD163699 [TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTCGGTTCATCATTTGTT] [+] EMBL CD139216 [ GTTCTTACCCATGATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAATCATCACTAACCATGCTGATCATGCCATCACATGGCGAAAAAATAAAGTACTCTGAACCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGATAAAGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACCAAGTGACATCAA ] consensusID : consensus_6437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence [GAGAAATATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAGCCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT] [-] EMBL CD065181 [GAGAAATATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCTGATCATACCATCACATGGCGAAAAAATAAAGTACTCTGAGCCTTGAATGACCCCTAACAATTTGGCTTTAAACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGGTTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATTCAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAACAATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT] consensusID : consensus_6437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAATTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAATTCAAATGATCAAAAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGTCAATAAAAGTCAGTCTATGAA] [+] EMBL CD098366 [TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAATTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAATTCAAATGATCAAAAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGTCAATAAAAGTCAGTCTATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6437#0 TGTATTGATTAGTAACTTTTTTAGACTTTCAGAATAATGGGGTTTATCGTTCTGACAAAT 60 consensus_6437#1 -----------------------------------------------------GAGAAAT 7 consensus_6437#2 ------------------------------------------------------------ consensus_6437#0 GATTAGAGAAATATCTGGATGAGGAACTGATTCAGTGACTAAACCATCACTAACCATGCT 120 consensus_6437#1 ATCTGGATCTGGATTTACACGAGGAACTGATTCAGTGAGTAAACCATCACTAACCATGCT 67 consensus_6437#2 -----TCTGAAAGTCTAAAAAAGTTACTAATCAATACAATAAACGATGCGGGAGGGCGAA 55 * * * ** *** ** * * ***** ** * * consensus_6437#0 GATCATACCATCACATGGCGAAAAAA------TAAAGTACTCTGAACCTTGAATGACCCC 174 consensus_6437#1 GATCATACCATCACATGGCGAAAAAA------TAAAGTACTCTGAGCCTTGAATGACCCC 121 consensus_6437#2 TTTCTCTGAAGAAGCTTGTGAAAAGAGCCTCATCACATGTTTTGAAT-TCAAATGATCAA 114 ** * * * * ***** * * * * * *** * ***** * consensus_6437#0 TAACAATTTGGCTTTA-AACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGG 233 consensus_6437#1 TAACAATTTGGCTTTA-AACTCTTTCTTTGTCATGCATTCTTGTGGGGAAAGTACGCTGG 180 consensus_6437#2 AAGGAAGTTAGTCTTACGAAAGAGGAAGTGAAAAGTAAAATTGTGGGAAAAGT----CAA 170 * ** ** * *** * ** * * * ******* ***** consensus_6437#0 TTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAAGTTGCCTTCCCACCTAATT 293 consensus_6437#1 TTTTATACGTCCTGTAAATCTGTTTTCTCAAACTTGAGAAGGTTGCCTTCCCACCTAATT 240 consensus_6437#2 TAAAAGTCAGTCTATGAA------------------------------------------ 188 * * * ** * ** consensus_6437#0 CAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAAC 353 consensus_6437#1 CAGTCAGAACATCTTGTATATGACGAAGTGACATCAAGTGACATTCGTTCTCTGGTAAAC 300 consensus_6437#2 ------------------------------------------------------------ consensus_6437#0 AATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTT-CGGTTCATCA 412 consensus_6437#1 AATTATTGTAAGCTTCACAAGTGTCCTCCAGTTTTTGTCTCTTTGTCTTACGGTTT---- 356 consensus_6437#2 ------------------------------------------------------------ consensus_6437#0 TTTGTT 418 consensus_6437#1 ------ consensus_6437#2 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||