These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6444#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 429 fasta sequence [AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACTATGTCAACGAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATGATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACAAGTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTTAAAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTCAAGTGATCAAGTATT] [+] EMBL AI068028 [AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACTATGTCAACGAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATGATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACAAGTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTTAAAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTCAAGTGATCAAGTATT] [+] EMBL AI068033 [AAGCAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGTATACTTGGAATGTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTACTACTATGTCAACGAAACAAAAATAATTGTAAAAAAAACTACATGTGGCGAAATACA ] [+] EMBL CD119338 [ TAAAAAATAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAGAAATCAATTTTT AAAAAACATGAAAACGTAAAAAAAAAACAAATATGTTTTTTTAAAGgg ] consensusID : consensus_6444#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [AGTACTATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATGATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCANTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAGAAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNCAANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT] [-] EMBL SM396 [AGTACTATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATGATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCANTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAGAAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNCAANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6444#0 AAGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 consensus_6444#1 ------------------------------------------------------------ consensus_6444#0 TTTTTTTTTTTTTTGAGACATTCAACATTCTTTAATCATCCAAATTGGCATAGTTGGAAT 120 consensus_6444#1 ------------------------------------------------------------ consensus_6444#0 GTGTTTGAAATTGATAAACTAATGTTACAATAACAAATCAATATTGAGAATATTAGTACT 180 consensus_6444#1 ------------------------------------------------------AGTACT 6 ****** consensus_6444#0 ATGTCAAC-GAAACAAAAATAATTGTAGAAAAAAATAGATGTGGCGAAATACATTTGATG 239 consensus_6444#1 ATGTCNACCGNACCCGNAATNATTGTAGNANAAGATAGATGTGNCGANANACANTTGATG 66 ***** ** * * * *** ******* * ** ********* *** * *** ****** consensus_6444#0 ATGAAAACATTTGAACAAAAAACTATTTCATTTATCAAAAATATGCGTCTAAATCACA-A 298 consensus_6444#1 ATGNNAACATNTGNACCGAAAACTATTTCANTTATCCANAAAANANANCTAAATCANCCA 126 *** ***** ** ** ************ ***** * ** * ******** * consensus_6444#0 GTAAAAAACAGATATTGAAACTGTTTTTACATAAGTTGTGCAGACAATTTTGATTTTCAG 358 consensus_6444#1 NTNAAGNGAAGATATTGAAACTGTTTTTACATAAATTGTNCAGACAATTTTGATTTTCAG 186 * ** ************************* **** ******************** consensus_6444#0 AAATCAATTTTTAAAAAAACATGAAAACGTAA--AAAAAAAACAAATATGTTT--TTTTC 414 consensus_6444#1 AAATCAATTTTTANACANACATGAANACGTANTAAAGAAAANCNAAAATCNNCCCNNTNC 246 ************* * * ******* ***** ** **** * ** ** * * consensus_6444#0 AAG-TGATCAAGTATT------------------- 429 consensus_6444#1 AANCTCNTTCCGTATTCCNGGNANCCCCGNGGGAT 281 ** * * ***** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||