cluster # 6449

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Schistosoma mansoni
cluster # 6449 cluster # 6449 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6449#0 length = 1189 sequences # 3

consensus_6449#1 length = 445 sequences # 1

consensusID : consensus_6449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1189
fasta sequence

                              [AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACAAAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAGATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGAACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCGAATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTGTTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATTTATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTATGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACAAAATTTTGAAAGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGAAATTCTACGAACAATTTTCTCGAAATCTTAAACTCGGTATTCATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACATCAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAGATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAACGTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGC-AAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAACACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCAACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAATGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA]

[+] EMBL CD086881             [AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACAAAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAGATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGAACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCGAATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTGTTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATTTATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTATGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACAAAATTTTGAAAGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD135803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCGATTCAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACANAATTTTGAAAGTTATTCGAAAGAACTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACAAAGAATCATTTAAGAAATTCTACGAACAATTTTCTCGAAATCTTAAACTCGGTATTCATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACATCAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAGATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAACGTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGC AAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCC                                                                                                                                                                                                                                 ]
[+] EMBL CD131456             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATTATCTACATGACCGAACCTATTGACGAATATTGTGTTCAACAATTGAAAGAATTCGAAGGCAAAAAAATTAGTTTCAGTAACGAAAGAAGGTTTAGAATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAACACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCAACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAATGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA]




>consensus_6449#0
AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACA
AAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAG
ATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGA
ACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCG
AATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTG
TTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATT
TATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTA
TGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATT
CAGAAGATTTACCATTGAACATTTCTCGAGAAATGTTACAACAAAACAAAATTTTGAAAG
TTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGACA
AAGAATCATTTAAGAAATTCTACGAACAATTTTCTCGAAATCTTAAACTCGGTATTCATG
AAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACATCAG
GTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAGATA
TTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAACGTG
TTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTGTTC
AACAATTGAAAGAATTCGAAGGCAAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAGAAT
TGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAACAC
TTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCAACC
GATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAATGG
AACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA

consensusID : consensus_6449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 445
fasta sequence

                              [AAGTTTTGATCAGTAATCGATTAGTTTCATCACCGTGTTGTATTGTTACATCACAATACGGTTGGTCAGCAACAATGGAACGAATTATGAAAGCACAAGCGTTACGTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAAATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAAGTTGATCAAGATAAAAATGATAAATCTGTCAAAGATTTAGTTACACTTCTCTATGAAACGTCACTTTTGGCCAGTGGTTTTACACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGTATGATTAAACTCGGTTTAGGTATCGATGAAGAAAATGCAACAGGTGAAGATCGAATGGCGACTGGAGAATCGGGTTCCGATCTGCCACCATTGGAAAGCACAGGTGAAAATTCTGCTTCCGTCTCTGC]

[+] EMBL CD090576             [AAGTTTTGATCAGTAATCGATTAGTTTCATCACCGTGTTGTATTGTTACATCACAATACGGTTGGTCAGCAACAATGGAACGAATTATGAAAGCACAAGCGTTACGTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAAATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAAGTTGATCAAGATAAAAATGATAAATCTGTCAAAGATTTAGTTACACTTCTCTATGAAACGTCACTTTTGGCCAGTGGTTTTACACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGTATGATTAAACTCGGTTTAGGTATCGATGAAGAAAATGCAACAGGTGAAGATCGAATGGCGACTGGAGAATCGGGTTCCGATCTGCCACCATTGGAAAGCACAGGTGAAAATTCTGCTTCCGTCTCTGC]




>consensus_6449#1
AAGTTTTGATCAGTAATCGATTAGTTTCATCACCGTGTTGTATTGTTACATCACAATACG
GTTGGTCAGCAACAATGGAACGAATTATGAAAGCACAAGCGTTACGTGACTCATCGACGA
TGGGTTATATGGCCGCTAAGAAACATTTGGAAATCAATCCGGATCATTCGATCGTAAAAA
CATTGAAAAACAAAGTTGATCAAGATAAAAATGATAAATCTGTCAAAGATTTAGTTACAC
TTCTCTATGAAACGTCACTTTTGGCCAGTGGTTTTACACTTGAATTGCCTCAACAACATG
CCGATCGAATCTTTCGTATGATTAAACTCGGTTTAGGTATCGATGAAGAAAATGCAACAG
GTGAAGATCGAATGGCGACTGGAGAATCGGGTTCCGATCTGCCACCATTGGAAAGCACAG
GTGAAAATTCTGCTTCCGTCTCTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6449#0      AAATTTCCGATGATGAAGCTGAAGACGAAAAGAAAACCGAAAAGAAAGATGATGAAGACA 60
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      AAAAAGACGAAGCCAAACTCGAAGAAGTTGAAGATGATGATGATGACGACAAGAAAAAAG 120
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      ATACCGACAAAAAGAAAAAGAAGAAAATCAAAGAAAAATACACCGATGAAGAAGAATTGA 180
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      ACAAACAAAAACCGATTTGGACACGAAATCCCGAAGATATTTCAACTGAAGAATACGCCG 240
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      AATTCTACAAACAATTGACAAACGATTGGGAAGATCATTTGGCTGTGAAACACTTCAGTG 300
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      TTGAAGGTCAATTGGAATTTCGAGCTCTTCTCTTCATTCCAAAACGTGCTCCATTCGATT 360
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      TATTCGAAAATCGCAAAACAAAAAATTCGATCAAATTGTACGTTCGACGTGTCTTCATTA 420
consensus_6449#1      ---------------------AAGTTTTGATCAG--TAATCGATTA--GTTTCATCACCG 35
                                           **  ** *****   *   ** *    ** ** ***   

consensus_6449#0      TGGAAAACTGTGAAGATCTTATGCCCGAATATTTGAACTTTATCAAAGGTGTCGTCGATT 480
consensus_6449#1      TGTTGTATTGTTACATCACAATA--CGGTTGGTCAGCAACAATGGAACGAATTATGAAAG 93
                      **    * *** *       **   **  *  *        **  ** *  *  *  *  

consensus_6449#0      CAGAAGATTTACCATTGAACATTTCT--CGAGAAATGTTACAACAAAACAAAATTTTGAA 538
consensus_6449#1      CACAAGCGTTAC-GTGACTCATCGACGATGGGTTATATGGCCGCTAAGAAACATTTGGAA 152
                      ** ***  ****  *    ***       * *  ** *  *  * **  ** **** ***

consensus_6449#0      AGTTATTCGAAAGAATTTAGTGAAGAAATGTATCGAATTAATCGAAGAATTAAACGAAGA 598
consensus_6449#1      ATCAATCCGGATCATTCGATCGTAAAAACATTGAAAAACAAA-GTTGATCAAGATAAAAA 211
                      *   ** ** *  * *  *  * * ***  *    **  **  *  **   * *  ** *

consensus_6449#0      CAAAGAATCATTTAAGAAATTCTACGAACAATTTTCT-CGAAATCTTAAACTCGGTATTC 657
consensus_6449#1      TGATAAATCTGTCAAAGA--TTTAGTTACACTTCTCTATGAAACGTCACTTTTGG----C 265
                        *  ****  * **  *  * **   *** ** ***  ****  * *   * **    *

consensus_6449#0      ATGAAGATTCAACCAATCGAGCGAAATTGGCATCATATCTTCGTTATCATTCGTCAACAT 717
consensus_6449#1      CAGTGGTTTTA--CACTTGAATTGCCTCAACAACATGCCGATCGAATCTTTCGT------ 317
                        *  * ** *  ** * **      *   ** ***  *      *** *****      

consensus_6449#0      CAGGTGATGAAGTGACATCATTCAAAGATTATGTTTCTCGAATGAAAGAAAATCAAAAAG 777
consensus_6449#1      ---ATGATTAA--------ACTC--GGTTTAGGTATCGATGAAGAAAATGCAACAGGTGA 364
                          **** **        * **   * *** ** **    * ****    * **     

consensus_6449#0      ATATTTATTACATCACCGGAGAATCACGACAAGTCGTCGATCAATCGGCTTTTGTTGAAC 837
consensus_6449#1      AGATCGAATG-GCGACTGGAGAATCGGGTT------CCGATCTGCCA-CCATTGGAAAGC 416
                      * **  * *     ** ********  *         *****   *  *  ***   * *

consensus_6449#0      GTGTTCGTAAACGTGGCTTCGAAATTATCTACATGACCGAACCTATTGACGAATATTGTG 897
consensus_6449#1      ACAGGTGAAAATTCTGCTTCCG---TCTCTGC---------------------------- 445
                            * ***    *****     * *** *                            

consensus_6449#0      TTCAACAATTGAAAGAATTCGAAGGCAAAAAATCAGTTTCAGTAACGAAAGAAGGTTTAG 957
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      AATTGCCCGAAGATGAAGAAGAAAAGAAGAAACACGAACAAGACAAAGAAAAATACGAAA 1017
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      CACTTTGCAAAGTTATGAAAGATATCCTCGACAAAAAAGTCGAAAAAGTTTTGATCAGCA 1077
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      ACCGATTGGTTTCATCACCTTGTTGTATCGTTACATCACAATATGGTTGGTCAGCAACAA 1137
consensus_6449#1      ------------------------------------------------------------
                                                                                  

consensus_6449#0      TGGAACGTATTATGAAAGCTCAAGCTTTACGTGATACATCAACCATGGGTTA 1189
consensus_6449#1      ----------------------------------------------------