cluster # 6478

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Schistosoma mansoni
cluster # 6478 cluster # 6478 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6478#0 length = 351 sequences # 1

consensus_6478#1 length = 155 sequences # 3

consensusID : consensus_6478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTATAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAGGTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGAATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCATCACCAGCCCCTTTGCCATTGTCTGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTTGACGAATTGCT]

[+] EMBL CD084667             [ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTATAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAGGTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGAATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCATCACCAGCCCCTTTGCCATTGTCTGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTTGACGAATTGCT]




>consensus_6478#0
ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTA
TAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAG
GTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGA
ATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGC
ACAAGCAACTACCTCCACTTCCGGTCCATCTTCATCACCAGCCCCTTTGCCATTGTCTGA
AGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTTGACGAATTGCT

consensusID : consensus_6478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 155
fasta sequence

                              [ACCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTTAGATGAGGAG]

[+] EMBL CD084632             [ACCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGGGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTT          ]
[+] EMBL CD084636             [ CCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTTAGATGAGGAG]
[+] EMBL CD084650             [ CCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGaa                                                ]




>consensus_6478#1
ACCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTT
CCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGGACCGGAAGTGGAGG
TAGTTGCTTGTGCAGAAGTCATGTTAGATGAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6478#0      ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTA 60
consensus_6478#1      ------------------------------------------------------------
                                                                                  

consensus_6478#0      TAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAG 120
consensus_6478#1      ------------------------------------------------------------
                                                                                  

consensus_6478#0      GTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGA 180
consensus_6478#1      ------------------------------------------------------------
                                                                                  

consensus_6478#0      ATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGC 240
consensus_6478#1      ------------ACCGCAAT-TCGCACCACGACTC-------ATCTGACATGACTTCTGC 40
                                  ** **  * *  **  *  * *        **   *************

consensus_6478#0      ACAAGCAACTACCTCCACTTCCGGTCCATCTTCAT-CACCAGCCCCTTTGCCATTGTC-- 297
consensus_6478#1      ACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGA 100
                      **********************************  **   **      **   **    

consensus_6478#0      ---TGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTT-GACGAATTGCT 351
consensus_6478#1      AGATGGACCGGAAGTGGAGGTAGTTGCT-TGTGCAGAAGTCATGTTAGATGAGGAG-- 155
                         ** * ***   *  * *   * *** **  ** * *    *** ** **   *