These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTATAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAGGTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGAATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCATCACCAGCCCCTTTGCCATTGTCTGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTTGACGAATTGCT] [+] EMBL CD084667 [ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTATAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAGGTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGAATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCATCACCAGCCCCTTTGCCATTGTCTGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTTGACGAATTGCT] consensusID : consensus_6478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 155 fasta sequence [ACCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTTAGATGAGGAG] [+] EMBL CD084632 [ACCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGGGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTT ] [+] EMBL CD084636 [ CCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGGACCGGAAGTGGAGGTAGTTGCTTGTGCAGAAGTCATGTTAGATGAGGAG] [+] EMBL CD084650 [ CCGCAATTCGCACCACGACTCATCTGACATGACTTCTGCACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGAAGATGaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6478#0 ACAAAATGCATGCTATGCGGCTCAGACTACAGATACGGACGACAAACAAAGCCGGAATTA 60 consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 TAAAACAAGTAAACCCGATATTAATTCTGAAACCGCGCCTGAAACTGAATCTGAAAACAG 120 consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 GTCGAGGTCAGACGAGAACCAGGGTACAGAATTAAGCAAAACGCTGATTATGAATTCAGA 180 consensus_6478#1 ------------------------------------------------------------ consensus_6478#0 ATACAAATCCTGACAGCGGTGTTACAAAAAAATTTGATGCGAATTAAACATGACTTCTGC 240 consensus_6478#1 ------------ACCGCAAT-TCGCACCACGACTC-------ATCTGACATGACTTCTGC 40 ** ** * * ** * * * ** ************* consensus_6478#0 ACAAGCAACTACCTCCACTTCCGGTCCATCTTCAT-CACCAGCCCCTTTGCCATTGTC-- 297 consensus_6478#1 ACAAGCAACTACCTCCACTTCCGGTCCATCTTCAGACAATGGCAAAGGGGCTGGTGATGA 100 ********************************** ** ** ** ** consensus_6478#0 ---TGAAGCGGTTTTACATGCGCTCGCTGTGACCAAACGCGGCGTT-GACGAATTGCT 351 consensus_6478#1 AGATGGACCGGAAGTGGAGGTAGTTGCT-TGTGCAGAAGTCATGTTAGATGAGGAG-- 155 ** * *** * * * * *** ** ** * * *** ** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||