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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6490#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 803 fasta sequence
[AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGGATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGGAATTGAGCTGGGAACGGTGTAGTACGTTAGTAAGAAAGTTAAATTTCCAAAAACCCAAAAGATCACTATCTTTTCAGTTTATTAGTTTAGTTAAATAATAAAATTATCATAACAATAAAATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAATTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAATACAGTAACTTATCCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCTAACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCACTAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAGCTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTTCGAAACAAAGGTTAAAAAATCTGAC]
[+] EMBL CD158949 [AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGGATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCG ]
[+] EMBL CD186729 [ ATTAGCCGCATTGGGAAAAGTGGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTTAGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGGAATTGAGCTGGGAACGGTGTAGTACGTTAGTAAGAAAGTTAAATTTCCAAAAACCCAAAAGATCACTATCTTTTCAGTTTATTAGTTTAGTTAAATAATAAAATTATCATAACAATAAAATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAATTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAA ]
[+] EMBL CD141932 [ TAGTGACATATCACTTGAATTACTACGTACTATGGATGATGAAGCAATGTTAAGTAAATACAGTAACTTATCCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCTAACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCACTAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAGCTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTTCGAAACAAAGGTTAAAAAATCTGAC]
consensusID : consensus_6490#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 462 fasta sequence
[AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATGCATTGGAGATGGCGGGTAAACCAACTCATTTTAAGCAAGCGTTAATCAATATTTATAGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAGAAGGGTACACACAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGAATAATTAACAAGATCAAAATATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAATAAAGTATATGGGCTTACCATATAAACTGATACTACAAAGCAGTGACCAGTGGAGTTCAACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGAACGATTGCTCAACTTCGTGAATTGGTTGAAGCTAGACATTAATACCACTTGATGCCGGCTCAGTGGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT]
[+] EMBL CD170802 [AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATGCATTGGAGATGGCGGGTAAACCAACTCATTTTAAGCAAGCGTTAATCAATATTTATAGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAGAAGGGTACACACAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGAATAATTAACAAGATCAAAATATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAATAAAGTATATGGGCTTACCATATAAACTGATACTACAAAGCAGTGACCAGTGGAGTTCAACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGAACGATTGCTCAACTTCGTGAATTGGTTGAAGCTAGACATTAATACCACTTGATGCCGGCTCAGTGGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6490#0 AAAACCACCAGGAGTTTGTGAGCGAGGAACATTCGACCTTTGTGGTGGTGTGTACTGAGG 60
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 ATGTCGAAGAATTCGCTGAGCACGCTTCTGATTCTGTGCATTAGCCGCATTGGGAAAAGT 120
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 GGACCAATTCGGATCTGGGGCCGTCGGATTGGTATTGCGAGTTGGAGTACCATTGAGCTT 180
consensus_6490#1 -----------------AAACACTTGAGTAAATATCAGCGAGCGAAATGAAAATGACATG 43
* * * * *** * * * * *** *
consensus_6490#0 AGCTGATTTAGGGGTGTCGCCCTCATCATCGACTAAGCGGGGCTTCTTTAATGGCGCAGG 240
consensus_6490#1 CATTGGAGATGGCGGGTAAACCAACTCATT--TTAAGCAAGCGTTAATCAATATT--TAT 99
** ** * ** ** **** ***** * ** * ***
consensus_6490#0 AATTGAGCTGGGAACGGTGTAGTACGT-TAGTAAGAAAGTTAAATTTCCAAAAACCCAAA 299
consensus_6490#1 AGTCAGACAAGAATAAATGACAGACATGTGATAAATAGGATAAG-----AAGGGTACACA 154
* * * * * ** ** * * *** * * *** ** ** *
consensus_6490#0 AGATCACTATCTTTTCAGTTTA-TTAGTTTAGTTAAATAATAAAATTATCATAACAATAA 358
consensus_6490#1 CAACTACGCTCATACAAAAATGGTCAATATTAATAAGTGA-ATAATTAACAAGATCAAAA 213
* ** ** * * * * * * * *** * * * ***** ** * * **
consensus_6490#0 AATGAATAGAACCAACATTCAGAACTAACTGAACGCTAATCTACTACTTCCTTATCTAAA 418
consensus_6490#1 TATGACTCATAATGGAAAAGAGAATTGGCTTGTCCAGAAGCTAGAA----------TAAA 263
**** * * * **** * ** * ** *** * ****
consensus_6490#0 TTATATCGAATGTTTGTAAAAAACTGCTACTACTACTGGGAATTATCTATAGTGACATAT 478
consensus_6490#1 GTATATGGGCTTACCATATAAA-CTGATACTACAA--AGCAGTGACC---AGTGGAGTTC 317
***** * * ** *** *** ****** * * * * * * **** *
consensus_6490#0 CACTTGAATTACTACGTACTATGGATGATGAAGCCATGTGTAGTAAATACAGTAACTTAT 538
consensus_6490#1 AACCAGGTCTGTTGTGAGATAGGAACTCACTGAAGACGATTGGTGA--ACGATTGCTCAA 375
** * * * * ** * * * * * ** * ** * ** *
consensus_6490#0 CCTACCACACGGATGGGAAAGCAAAACCCTTAGAATGCAAAGCAACATGACGTTCTGTCT 598
consensus_6490#1 CTTCGTGAATTGGTTG--AAGCTAGACATT---AATACCACTTGATGCCG-GCTCAGT-- 427
* * * * * * **** * ** * *** * * * * ** **
consensus_6490#0 AACCTACTACCTGAAAAACAGCTTATTAGTTTTCAGCTTACTTAAGACAAATACCGCCAC 658
consensus_6490#1 GGTTTAATGGTTAAGCGATAGCTCGCGAGACTGAT------------------------- 462
** * * * * **** ** *
consensus_6490#0 TAGTTTGTCACCATATTAAAATATACAATGCTTATGTTGTTTACTAGGTTTGAATAAAAG 718
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 CTTACAATAATGTAAATATGATTTACCTATTAATCAGATTAATAAAAAGGTTTAAAATTT 778
consensus_6490#1 ------------------------------------------------------------
consensus_6490#0 CGAAACAAAGGTTAAAAAATCTGAC 803
consensus_6490#1 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||