These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6493#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 706 fasta sequence [CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATATTTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTTTTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAATTGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACCATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC] [+] EMBL CD085239 [CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATATTTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTTTTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAATTGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACCATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTA ] [+] EMBL CD142134 [ ACTGAGTCATGCCATTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAGTGTTACATCTTTTTAGTTATTATATGCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTCCAATTATTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATGGCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTAC TTTTTTCTCGACCACCATAGCGAAGTGTCCACCATACTTCTCAACTATCTGTTGTTTATGGATTTTCTGGCTTCTTTGAATTCGTATATACTCTTCACTCAGTCTGGGTAATGATGTTGTTGTATTATAATGGAAGTTATGCGCGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTA ] [+] EMBL CD133597 [ TTGTATTATAATGGAAGTTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAGTTTATTTATTTCGTAGTTGATTAAGCTT ACCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC] consensusID : consensus_6493#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [GTATGTGATGAGCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAGTTTATTTTTGGAACTCCTTAAACACACCATCG] [-] EMBL CD194644 [GTATGTGATGAGCTGTAAGAGTTGGTCTTTTTACATATGTCAGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAAGTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAGTTTATTTTTGGAACTCCTTAAACACACCATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6493#0 CAAATAACAATACTTAGTACTTCTGAAGAACACATTTATGCTTGGGATAGAATAATATAT 60 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TTAATGTGAATATAAATAAGTTAAACATAATGAGCGCGTCTGCAACACTCAGTCATGCCA 120 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TTCGATTGAATGAATATCTCCACGTTCACCACTTCCGACCTTCTCCAAATGTTACATCTT 180 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TTTAGTTATTATATTCTTGACTCCGGAGACCATGTGATTAGGAAACAATGCCACTTCAAT 240 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TGTTCATCCGAATATACTGATCGTAAATAGGACTGCAGGAAGAGAAATGTTTGAGAAATG 300 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 GCAGTCTTACCTAGTTATTGATTTTTAAGTGATAATTGTCTACTTTTTTTCTCCACCACC 360 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 ATGGCGAAGTGTTCACCATATTTTTCAACTATCTGTTGTTCATGGATTTTCTGGCTTCTT 420 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TGAATTCGTATATACTCTTCACTCCGTCTGGGTAATGATGTTGTTGTATTATAATGGAAG 480 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TTATGCGTGTTATTTAACTTCCATCGGCTGCATGGTCTAAGTATGTGATGAGCTAATTAG 540 consensus_6493#1 ------------------------------------------------------------ consensus_6493#0 TTTATTTATTTCGTAGNTGATTAAGCTTAACCTGTAAGAGTTGGTCTTTTTACATATGTC 600 consensus_6493#1 ------------GTATGTGATGAG-------CTGTAAGAGTTGGTCTTTTTACATATGTC 41 *** **** * ***************************** consensus_6493#0 AGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAA 660 consensus_6493#1 AGTAGTATATGACGACAAGGATATCGACAAGTCATAAATGTTCGACAATTGCACTCGCAA 101 ************************************************************ consensus_6493#0 GTGCCTGCATCTAGGTCATAACACCACAGAACTGTATTTAAATCGC-------------- 706 consensus_6493#1 GTGCCTGCATCTAGTTCATAACACCACAAAACTGTATTTAAATCGCATGTCCTTCAGCAG 161 ************** ************* ***************** consensus_6493#0 -------------------------------- consensus_6493#1 TTTATTTTTGGAACTCCTTAAACACACCATCG 193 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||