These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6494#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 486 fasta sequence [AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCCTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCATGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTTAGACAA] [+] EMBL CD065519 [AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCCTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCATGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTTAGACAA] [-] EMBL CD141432 [ TCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAANCGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAACTTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTACATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTTTACAAGCGATCTTTACTTGAAAATCACTCTAGTTGGAGATATAACTCATATATTTCGTCTTGCTGTTGATCGgta ] [+] EMBL BG932734 [ CTGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTATGCTGTCAATATTGATGAACAGTTGACAACTCATGAAAg ] consensusID : consensus_6494#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAACGATAAATTAAATTTATTATCCGACTCAACTTTGCAA] [-] EMBL CD180133 [GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGAAAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCCTGACGAAACTAGTAAATCAATTATAACGATAAATTAAATTTATTATCCGACTCAACTTTGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6494#0 AAGGGCAGAAGAACATGACAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGA 60 consensus_6494#1 ---GGCAGAAGAACATGTCAATATGCAAAGTATAAATGAAAATGAGAAGTCAACTAATGA 57 ************** ****************************************** consensus_6494#0 AAATACTGATGATCAGCGAAATGATTCTAATTCACCCAGTAATCGTGGTGACGAACAGCC 120 consensus_6494#1 AAATACTGATGATCAGCGAAGTGATTCTAATTCACCCAGTAATCGTGATGACGAACAGCC 117 ******************** ************************** ************ consensus_6494#0 TGACGAAACTAGTAAATCAATTATAAACGATAATTCCGTTAGTCTCTCCGATAACACTTA 180 consensus_6494#1 TGACGAAACTAGTAAATCAATTATAA-CGATAAATTAAATTTATTATCCGACTCAACTT- 175 ************************** ****** * * * ***** **** consensus_6494#0 TGCTGTCAATATTGATGAACAGTTGACAACTCATGAAATTCCCCCTGAAATCGAGACAAC 240 consensus_6494#1 TGCAA------------------------------------------------------- 180 *** consensus_6494#0 TTTGTCAGCGTCATCATCACCGCACCAACTACCGACAGCATCTTTAGAAACATTGAGTAC 300 consensus_6494#1 ------------------------------------------------------------ consensus_6494#0 ATGTGAGAGTCAATTATTACAAAAGGAAAATAACAGTGAAGACAAAAATGTAACTAAGTT 360 consensus_6494#1 ------------------------------------------------------------ consensus_6494#0 TACAAGCGATCTTTACTTGAAAATCACCCTAGTTGGAGATATAACTCATATATTTCGTCA 420 consensus_6494#1 ------------------------------------------------------------ consensus_6494#0 TGCTGTTGATCGCCTCACTCAAGTCTACAGTTTTCTTTTACGTGCTGGTGTAGGCAGCTT 480 consensus_6494#1 ------------------------------------------------------------ consensus_6494#0 AGACAA 486 consensus_6494#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||