These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 267 fasta sequence [CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCCGCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTCCCTGCCGGCCGTCCGACGGGTTTCGGAATCAATNGAGGTT] [+] EMBL CD093748 [CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCCGCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCGGGGTCTGTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTC ] [-] EMBL CD093778 [ CCTGCCAGCCGCTCCGTAGACTCAGTTCTTAATCAGAGTGCATTCCCTCAGAACTCCATTAACGCTGGCATCATCTGGCCATACAGTGACAAGGAAATATGGTTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTGTCTGTATCCGTCCTGCCGACCGAGTCGGTGTCTCCCTGCCGGCCG ] [-] EMBL CD093740 [ GCCGCTCCGTAGACACAGTTCCTAATCAGAGTCCATTCCCTCAGAACTACATTAACACTGGCATCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAAACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTC GTGTCTCCCTGCCAGCCCTCCGACGGGTTTCGGAATCAATNGAGGTT] consensusID : consensus_6501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 107 fasta sequence [CGCACGGAGCTCCCTGCCGGCCGCTCGGCCGGCACGACGGATACAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGAGCAAATAGCCATATTTCCTTGTTAATG] [+] EMBL CD093736 [CGCACGGAGCTCCCTGCCGGCCGCTCGGCCGGCACGACGGATACAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGAGCAAATAGCCATATTTCCTTGTTAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6501#0 CTGTAGGCGGCCGCGAATATCNATTGATTCCCGAAACTCGCACGGAGCTCCCTGCCAGCC 60 consensus_6501#1 --------------------------------------CGCACGGAGCTCCCTGCCGGCC 22 ****************** *** consensus_6501#0 GCTCCGTAGACACAGTTCCTAATCAGAGTGCATTCCCTCAGAACTCCATTAACACTGGCA 120 consensus_6501#1 GCTCGGCCGGCACGACGGATA--CAGAGAGCCTGTATTCTTTCCTTTAGTGGTCACAGGA 80 **** * * *** ** ***** ** * ** ** * * * * consensus_6501#0 TCATCTGGCCATACAGTAACAAGGAAATATGGCTATTTGCTCCTGTCACCACTAAAAAAA 180 consensus_6501#1 GCAAATAGCCATAT--TTCCTTGTTAATG------------------------------- 107 ** * ****** * * * *** consensus_6501#0 ACAATTCAGGGTCTCTGTATCCGTCCTGCCGGCCTAGTCGGTGTCTCCCTGCCGGCCGTC 240 consensus_6501#1 ------------------------------------------------------------ consensus_6501#0 CGACGGGTTTCGGAATCAATNGAGGTT 267 consensus_6501#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||