These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGAAGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCT-AAAAATATTGCCTAAATTTACCAAACCAAAAAACCGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAGAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC---TAATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAGAGGGAGTATGCTCTTCATTCAGTC-AAAAAAAAATGCCATGTTTTAACAACTTGCTAATACGTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGTTGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTGAATGAATGGAACGGGGAAAACA] [-] EMBL SM1247316 [TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGAAGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCT AAAAATATTGCCTAAATTTACCAAACCAAAAAACCGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAAAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGNCAAAAGTTCANNGYATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGAAGAAGAAGAACAATACAGTCAGAATGAATA TACACAATCCAACTAACTTATTGTAAATGAAG ] [+] EMBL CD066046 [ ACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACACACACATACATATGCATAATCTAAAAAATATTGCCTAAATTAACAAAACAAAAAAAACGTATAGAATGATCAATGAAAAAGAACAACAACAACACAACTATGAATGGATATCACTAATTACTACTACGTCTTCACTAGATCTGATTTACGGAAGCAGAAGCATAAACATGACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC TAATTCTTACATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAGAGGGAGTATGCTCTTCATTCAGTC AAAAAAAAATGCCATGTTTTAACAACTTGCTAATACGTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGTTGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTGAATGAATGGAACGGGGAAAACA] [-] EMBL CD131941 [ AGAAGCATANTCATGACATACATGCATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTC TAATTCTTACATTAAAATAGTATCTGTAATACCCATAGTAGTAGTAGAAGAAGACCAATACAGTCAGAATGAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGAGACAGTAATTAAGAGGGAGTATGCTCTTCATTCAGTCAAAAAAAAAATGCCATGTTTTAACCACTTGCTAAAACG ] consensusID : consensus_6533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [CGAGANNGAGAGNAAGAAGGAGAAAGTGAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACATCTTCCCATATATGTTTTACCGAGTTATTATTATTATTCAGAATATCTTGTATTGATTATCATGATCTTAGTTTCTATGACAACTAACAAATAATTGAACCTATCTACCATCAACTATACATGTTGACATTTTCATTTACGTTACTTACTTTACTTACTTACTTACTTACGCCTGTTACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG] [-] EMBL CD198709 [CGAGANNGAGAGNAAGAAGGAGAAAGTGAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTGCACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATACATACATACATCTTCCCATATATGTTTTACCGAGTTATTATTATTATTCAGAATATCTTGTATTGATTATCATGATCTTAGTTTCTATGACAACTAACAAATAATTGAACCTATCTACCATCAACTATACATGTTGACATTTTCATTTACGTTACTTACTTTACTTACTTACTTACTTACGCCTGTTACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6533#0 TCCAATGGTTAGAACCCAAAAAKASAGGAAATTGAGGAAAACAAACGGAGGAGAAGAAGA 60 consensus_6533#1 ----------------------------------------------CGAGANNGAGAGNA 14 *** *** * consensus_6533#0 AGAAGGAGAAAGTGAAAAAATGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTG 120 consensus_6533#1 AGAAGGAGAAAGTGAAAAA-TGTAACTACATCACCAATTGAGAAACTTAATGTTAAATTG 73 ******************* **************************************** consensus_6533#0 CACCATACTGGMTTACAACATATAAGYGAAATTAGATCAAAGAGATCAATGCATGCATAC 180 consensus_6533#1 CACCATACTGGTTTACAACATATAAGAGAAATTAGATCAAAGAGATCAATGCATGCATAC 133 *********** ************** ********************************* consensus_6533#0 ATACATACACACACATACATATGCATAATCTAAAAATATTGCCTAAATTTACCAAACCAA 240 consensus_6533#1 ATACATACATCTTCCCATATATGTTTTACC--GAGTTATTATTATTATTCAGAATATCTT 191 ********* * * ***** * * * * **** *** * * * * consensus_6533#0 AAAACCGTATAGAATGATC--AATGAAAAAGAACAACAACAACACAACTATGAATGGATA 298 consensus_6533#1 GTATTGAT-TATCATGATCTTAGTTTCTATGACAACTAACAA-ATAATTGAACCTATCTA 249 * * ** ****** * * * ** * ***** * ** * * ** consensus_6533#0 TCACTAATTACTACTACGTCTTTACTAGATCTGATTTACGGAAGCAGAAGCATAAACATG 358 consensus_6533#1 CCATCAACTA----TACATGTTGAC--ATTTTCATTTACGTTACTTACTTTACTTAC-TT 302 ** ** ** *** * ** ** * * ******* * * ** * consensus_6533#0 ACATACATACATACATATACATTCAGTATGTATATAAGGGTCAAAAGTTCTAATTCTTAC 418 consensus_6533#1 ACTTACTTACGCCTGT-TACTCCTCGTGGAGGAGTATGGGCCGCTCGCTAG--------- 352 ** *** *** * *** ** ** *** * * * consensus_6533#0 ATTAAAATAGTATCTGTAATAACAATAGTAGTAGTAGAAGAAGAACAATACAGTCAGAAT 478 consensus_6533#1 ------------------------------------------------------------ consensus_6533#0 GAATATTACACAATCCAACTAACTTATTGTAAATGAAGAAGGGGGGGGACAGAAATTAAG 538 consensus_6533#1 ------------------------------------------------------------ consensus_6533#0 AGGGAGTATGCTCTTCATTCAGTCAAAAAAAAATGCCATGTTTTAACAACTTGCTAATAC 598 consensus_6533#1 ------------------------------------------------------------ consensus_6533#0 GTTCCCCTTTGTAGAGCAATTACAAATGACAAGAATAATAACTGATGAGAAAGGAAGTGT 658 consensus_6533#1 ------------------------------------------------------------ consensus_6533#0 TGTATTTTATCATCAAAACGACCATATCAGTCAGTAAGTATATGATGCATGTAACTTTTG 718 consensus_6533#1 ------------------------------------------------------------ consensus_6533#0 AATGAATGGAACGGGGAAAACA 740 consensus_6533#1 ---------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||