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Schistosoma mansoni
cluster # 6536 cluster # 6536       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6536#0 length = 675 sequences # 2  
consensus_6536#1 length = 556 sequences # 2  

consensusID : consensus_6536#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 675
fasta sequence
                              [TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG-CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG]

[+] EMBL CD141964             [TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD066220             [                                                                                                                                                    TGGAAGAGCGTAATCAAGACGCCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG]


>consensus_6536#0 TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGT GGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATT TATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACGCCACCATATAT GTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCA GGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTAC GGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATG ATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTT GATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTG TACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCT GAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGAT GCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCA TATGCATTCAAAAAG



consensusID : consensus_6536#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 556
fasta sequence
                              [CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA]

[+] EMBL CD129304             [CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA]
[+] EMBL CD067334             [           gggAGGTGG AGATCA GGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATTGGAACTTTTTCTTCAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]


>consensus_6536#1 CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATG AAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATG TTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTA TGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGA AGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATA TTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTG CATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTA AAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGA TGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACA GTAAAGGTGAACGCCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6536#0      TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGT 60
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      GGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATT 120
consensus_6536#1      ------------------------------------------------------------
                                                                                  

consensus_6536#0      TATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCA-AGACGCCACCATATA 179
consensus_6536#1      -----------------CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATA 43
                                       *  *    *  *  * * *   *****  **************

consensus_6536#0      TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 239
consensus_6536#1      TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 103
                      ************************************************************

consensus_6536#0      AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 299
consensus_6536#1      AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 163
                      ************************************************************

consensus_6536#0      CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 359
consensus_6536#1      CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 223
                      ************************************************************

consensus_6536#0      GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 419
consensus_6536#1      GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 283
                      ************************************************************

consensus_6536#0      TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 479
consensus_6536#1      TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 343
                      ************************************************************

consensus_6536#0      GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCC 539
consensus_6536#1      GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCC 403
                      ****************************************************** *****

consensus_6536#0      TGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 599
consensus_6536#1      TGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 463
                      *********************** ************************************

consensus_6536#0      TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTC 659
consensus_6536#1      TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCC--ATCACTATCT-C 520
                      **********************************************    ******** *

consensus_6536#0      ATATGCATTCAAAAAG-------------------- 675
consensus_6536#1      ATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA 556
                      ****************                    




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)