These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6536#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 675 fasta sequence [TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG-CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG] [+] EMBL CD141964 [TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGTGGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATTTATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCAAGACG CCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAA ] [-] EMBL CD066220 [ TGGAAGAGCGTAATCAAGACGCCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCCTGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTCATATGCATTCAAAAAG] consensusID : consensus_6536#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence [CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA] [+] EMBL CD129304 [CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGCAGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTACGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATATGATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCTTGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACTGTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCCTGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGATGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCATCACTATCTCATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA] [+] EMBL CD067334 [ gggAGGTGG AGATCA GGACGCCACCATATATGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATTGGAACTTTTTCTTCAGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6536#0 TGTTTAAAGTTTTGCCATAACAAGTGGTTGTAGACTCATTACAATTACTTAAACCCCAGT 60 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 GGCTGATTAACTTTTTTCTAATACTTCTGGGTGATATATTGTCAGTTATAACTGTTCATT 120 consensus_6536#1 ------------------------------------------------------------ consensus_6536#0 TATACTTGAAAAATGACCATTGGTGTTATGGAAGAGCGTAATCA-AGACGCCACCATATA 179 consensus_6536#1 -----------------CGGTACCCTGGTCTAGGTGGNAAATCACGGACGCCACCATATA 43 * * * * * * * ***** ************** consensus_6536#0 TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 239 consensus_6536#1 TGTTGGTGGATTGGATGAAAAAGTTAACGAATCGATCCTATGGGAACTTTTTCTTCAGGC 103 ************************************************************ consensus_6536#0 AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 299 consensus_6536#1 AGGACCAGTTGTCAATGTTCATATGCCTAAAGACCGAATAAACATGCAGCATCAGGGTTA 163 ************************************************************ consensus_6536#0 CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 359 consensus_6536#1 CGGATTTGTAGAGTTTATGACGGAAGAAGATGCCGACTATGCTATGCGTATTATGAATAT 223 ************************************************************ consensus_6536#0 GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 419 consensus_6536#1 GATTAAATTGTATGGGAAGCCTATTCGCGTAAACAAAGCATCAGCAAATCAGAAAAATCT 283 ************************************************************ consensus_6536#0 TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 479 consensus_6536#1 TGATATAGGTGCTAATATTTTCATTGGCAACTTAGATCCTGAGGTAGATGAAAAGCTACT 343 ************************************************************ consensus_6536#0 GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGTGACCC 539 consensus_6536#1 GTACGATACTTTCAGTGCATTTGGTGTTATACTACAAACTCCAAAAATTATGCGCGACCC 403 ****************************************************** ***** consensus_6536#0 TGAAACGGGGAATTCTAAAGGGTACGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 599 consensus_6536#1 TGAAACGGGGAATTCTAAAGGGTGCGCGTTTATAAATTTTGCAAGTTTTGAAGCTAGTGA 463 *********************** ************************************ consensus_6536#0 TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCCCATCCACTATCTTC 659 consensus_6536#1 TGCAGCAATTGAAGCGATGAACGGACAGTATCTTTGTAATCGAGCC--ATCACTATCT-C 520 ********************************************** ******** * consensus_6536#0 ATATGCATTCAAAAAG-------------------- 675 consensus_6536#1 ATATGCATTCAAAAAGGACAGTAAAGGTGAACGCCA 556 **************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||