These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6543#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAAGGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGCAATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGCAAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGCAACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAATAAACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGTTACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGCAGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAATACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATGTATCCTAGCAGCATCATCGATGAATGTGGAGGAACTGGTGCAGACGTAAAGGCGAAGATTGGAAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG] [-] EMBL CD066405 [CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAAGGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGCAATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGCAAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGCAACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAA ] [+] EMBL CD069306 [ cttgtgtgACAACTACATGACACAACGAAGAAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGGGGGAAAGCCAATCACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGTAGATCTCTTGAATAAACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGTTACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGCAGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAATACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATGTATCCTAGCAGCATCATCGATGAATGTGGAGGAACTGGTGCAGACGTAAAGGCGAAGATTGGAAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG] consensusID : consensus_6543#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 438 fasta sequence [TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAGGCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGTCACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGCAGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTAGTGACTGGGATGTTTTCGTGATTTAAAAAGT] [-] EMBL CD187026 [TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAGGCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGTCACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGCAGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTAGTGACTGGGATGTTTTCGTGATTTAAAAAGT] [-] EMBL CD192313 [ CGAGTAGGATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAAGAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGAAAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6543#0 CAAAGAAGCACTAACTTCAACGTGTCACGAGGTGCTCGGCCGCAACAATCATTATCATAA 60 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 GGAATGGATCTCCATTGAAACCCTCGCCAAGATTCAAGAAAGGAAGAACAAGGAGACAGC 120 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 AATTAACACCAGTAGAACAAGAACAGAGAAAGTCAATGCACAAACTGAATACACAGAAGC 180 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 AAACAAGCAAGCGAAGAACAGCATTAGAGCTGACAAATAGAAATATGTGGAAGAGCTAGC 240 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 AACGACAGTGGAAAAAGCTGTAACAGAAGGAATACGAAACAACTACATGACACAACGAAG 300 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 AAACTGACAGGGAACTATTGTAAATCAGAGATCAGTCAAAGAAAAAGAGGGAAAGCCAAT 360 consensus_6543#1 ------------------------------------------------------------ consensus_6543#0 CACCGAAATTCAAGGACAGGGGAACAGATGGGTAGAACACTTTGAAGATCTCTTGAATAA 420 consensus_6543#1 ---------TCAAGAACATAAGAACAGATGAGTAGAGCATTTTGAATAACTCTCGAATAG 51 ***** *** ********* ***** ** ****** * **** ***** consensus_6543#0 ACCGGCTCCATTGAATCCACCGGACATTGAAGCAGCACCTACAAACCTTCCTATAGATGT 480 consensus_6543#1 GCCAGCTCCATTGAATCCACCGAAAATCGAAACACCACACACAAACCTTTCTATAGATGT 111 ** ****************** * ** *** ** *** ********* ********** consensus_6543#0 TACTCCACCAACGATCGAAGGAATCAGGATGGCCATCAGACTAATCAAGAGTGGGAAAGC 540 consensus_6543#1 CACTCCACCAACGATCGAAGGAATCAGGGTGGCCATCAGACAAATGAAGAGTGGGAAAGC 171 *************************** ************ *** ************** consensus_6543#0 AGCAGGATCTGGCAAAATGCCAGCTGAAGCATTGAAGTCAGACACACAAGTATCTGCAAA 600 consensus_6543#1 AGTAGGACCTGACAATATACTAGCCGACGCACTAAAGTCAGACATCGAAGAAACTGCGAG 231 ** **** *** *** ** * *** ** *** * ********** *** * **** * consensus_6543#0 TACGCTCCACATTCTCTCCAGAAATAACTGGGAAGATGTGTAAACTCTCATG-TATCCTA 659 consensus_6543#1 TAGG----ATATGTGCCGACAGACTGGAAGGAGGGATATCAGGTATATCAAGATACAAAA 287 ** * * ** * * * ** *** * * *** * ** * consensus_6543#0 GCAGCATCATCGATGAATGTGGAGGAACTGGTGCAG----ACG-TAAAGGCGAAGATTGG 714 consensus_6543#1 GAAAGCTGATCTGAGCAAGTGTGAGAACTAAGGAGGCATCACACTACTAGCGGTACCAGA 347 * * * *** * * *** ***** * * ** ** *** * consensus_6543#0 AAAAGTAAGGGCCACATTCCTACAATTGTAGAACATATG--------------------- 753 consensus_6543#1 AAGCATTTTCAACAGAATGTTCCTCTTTCATGAGGTTTATCAGGCGTAAGTAAGTAATTA 407 ** * ** * * * * ** * * * * consensus_6543#0 ------------------------------- consensus_6543#1 GTGACTGGGATGTTTTCGTGATTTAAAAAGT 438 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||