These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 700 fasta sequence [TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGTTGAATGCGTGATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTTTTATTTAGTGATATGCCGAAACCCCCTGGTCGACCAGGTCTTATCGATATTCGTCCTACAGAAGCATTGATTAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAAATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGGATTCACAGTAGATTGTCGTTATCTTATTAATAATCTTAAACCT-GGTGTATATTATCGTGTCCGTGTATCCGCTAGAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCGTTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACTGGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAATCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGATATAATGGGATAATTCCAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTGATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA] [+] EMBL CD066601 [TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGTTGAATGCGTGATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTTTTATTTAGTGATATGCCGAAACCCCCTGGTCGACCAGGTCTTATCGATATTCGTCCTACAGAAGCATTGATTAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAAATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGGATTCACAGTAGATTGTCGTTATCTTATTAATAATCTTAAACCT GGTGTATATTATCGTGTCCGTGTATCCGCTAGAAATGCATTCGGTTGGG ] [-] EMBL CD190578 [ CACCTTCAGGGCATCGGCTTGGATTCACAGTAAAATGTCGTTATCTTATTAATAATCTT AACCTGGGTGTATATAATCGTGCCCGTGTATCCGCTAGAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCGTTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACTGGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAATCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGATATAATGGGATAATTCCAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTGATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA] consensusID : consensus_6547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGTTCTACACATGCTTTTTAGGACGATCACATGGAAATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTATTGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCGAGTTACGCAAGAATCAGCCAAAATCAATGGCGTC] [+] EMBL CD117311 [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGTTCTACACATGCTTTTTAGGACGATCACATGGAAATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTATTGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCGAGTTACGCAAGAATCAGCCAAAATCAATGGCGTC] [+] EMBL CD117165 [AACATATACAAAACTTATTCTTGGAAAAACTCATCCAATGTTAAATGAAGGAGCGAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAATCACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAATGCTTACTATTCTTCATGGATCTTGTGGTGGAATATATTCTTCATTTGAAGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATTATTACCATCTGGTTGGTCAACTGGTTGGTTAGAAGATGATGCAGTTAAACCGACACGAAGTATAACAGTAATGCAGTGGATTCCTGGTGGACGTCTTATTGATGTTTTGTGCAGTCGAGTAAAATATACTGAATTTTCTGTTATGATGTGGAGTCAACAGATTCTTTCAGCGTTAAAATGGGTCTACACA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6547#0 TTATGGCTTTGTTTAAGTGATCTTCATCCGGAACAAGATCGCAGTGTTGT-TGAATGCGT 59 consensus_6547#1 -----AACATATACAAAACTTATTCTTGGAAAAACTCATC-CAATGTTAAATGAAGGAGC 54 * * ** * *** * ** *** ** **** **** * * consensus_6547#0 GATAAGAAATCGTGCTGGAAAATCAAGAACAAAAGCACGGCTT---TTATTTAGTGATAT 116 consensus_6547#1 GAATTTCAATAATGTTCGACATCAAAACATATCTCTTCCACCTAGATTACTAAGTAAAAT 114 ** *** ** * ** * ** * * * * * *** * *** * ** consensus_6547#0 GCCGAAACCC--CCTGGTCGACCAGGTCTTATCGATATTCGTCCTACA-GAAGCATTGAT 173 consensus_6547#1 CACATATCTTAATTTAGAAGACAATAATCTACTGAAAAAAGCTCGTCGTGAAGCACTAAT 174 * * * * * *** * ** ** * * * * ****** * ** consensus_6547#0 TAGTTGGCTCTCTTCAACGTCGGATTCGAATGAAGATCTGATTTATCGCCTTGATATCAA 233 consensus_6547#1 -GCTTACTATTCTTCA----TGGATCTTGTGGTGGAATATATTCTTCAT-TTGA------ 222 ** ****** **** * ** *** ** **** consensus_6547#0 ATATTCAGACCGTGATAATGAACCACCTTCATGGCATCGGCTTGG-ATTCACAGTAGATT 292 consensus_6547#1 ------AGATTATTATAATGAACAACATAACTCATATCTTTTCACTAATCAACGACAATT 276 *** * ********* ** * * *** * * *** * *** consensus_6547#0 GTCGTTATCTTATTAATAATCTTAAACCTGGTGTATATTATCGTGTCCGTGTATCCGCTA 352 consensus_6547#1 ATTACCATCTGGTTGGTCAACT---GGTTGGT-TAGAAGATGATGCAGTTAAACCGACAC 332 * **** ** * * ** **** ** * ** ** * * * * consensus_6547#0 GAAATGCATTCGGTTGGGGCAATTACAGCATTGCATCTTCTGGTTTCCGTACACCTATCG 412 consensus_6547#1 GAAGTATA----------ACAGTAAT-GCAGTGGAT-TCCTGGTGGACGTCTTATTGATG 380 *** * * ** * * *** ** ** * ***** *** * * consensus_6547#0 TTTCTATGGATCAGTCATCAACTATTCTATCACCCAATGAACGAAAATGGATCTTCAACT 472 consensus_6547#1 TTTTGTGCAGTCGAGTAGAATATACTGAATTTTCTGTT--ATGATGTGGAGTCAACAGAT 438 *** ** * * ** * ** * * * ** * ** ** * consensus_6547#0 GGCGTCAATCAGAAAATATCTACGCATTAAGCGATCATCCAATAGCTTTACAATATGCAA 532 consensus_6547#1 TCTTTCAGCGTTAAAATGGTTCTACAC---ATGCTTTT----TAGGACGATCACATGGAA 491 *** ***** * ** * * * *** * * *** ** consensus_6547#0 TCGATCAGTCAATCAATGTACCTCCACCGTCAGACAAAATTTTACAGAAACTTAATCGAT 592 consensus_6547#1 ATATTTGTCCGGAGCATATACTTGTTGCACGACGAGCATCTTCGCTCCCAGATATTGTAT 551 * * ** *** * * * * ** * * ** * ** consensus_6547#0 ATAATGGGATAATTC-CAAGTTTAGATGTATTAAAATCCATATGTAGACCAATTCGTCTG 651 consensus_6547#1 TGACTGGGTTCGGTCATGAATCTGATTCAGATGAAACCAACAACTACTTTTCAGCTCCCG 611 * **** * ** * * * * * *** * * * ** * * * consensus_6547#0 ATCAATAAGGGAACATATACAAAACTTATTCTTGGAAAAACTCATCCAA 700 consensus_6547#1 AGTTACGCAAGAAT-CAGCCAAAATCAATGGCGTC-------------- 645 * * *** * ***** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||