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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6560 cluster # 6560       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6560#0 length = 781 sequences # 2  
consensus_6560#1 length = 195 sequences # 2  

consensusID : consensus_6560#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence
                              [TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA]

[+] EMBL CD178123             [TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTA                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD067049             [                                                                                                                                                                                                                                                                                                                                             CTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA]


>consensus_6560#0 TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTA CAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCA AACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGT ACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAAT CCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGAT TTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATG AGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGA GAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT ATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCAC GTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGT GCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACT TTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCA CTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAAT A



consensusID : consensus_6560#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 195
fasta sequence
                              [TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG]

[-] EMBL CD129590             [TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCT                                                                                              ]
[-] EMBL CD129577             [  GCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG]


>consensus_6560#1 TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTC CATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCTCGCTCTTAGTTCAATTTAC TTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATA ACTATGGGTACCGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6560#0      TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTA 60
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      CAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCA 120
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      AACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGT 180
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      ACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAAT 240
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      CCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGAT 300
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      TTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATG 360
consensus_6560#1      ----------------------------------TGGCAATGAAAGTACATCAGTTGATG 26
                                                        ** ***********************

consensus_6560#0      AGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGA 420
consensus_6560#1      AGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGA 86
                      ****************************** ********************** ******

consensus_6560#0      GAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 480
consensus_6560#1      GAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 146
                      ****** *****************************************************

consensus_6560#0      ATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCAC 540
consensus_6560#1      ATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG----------- 195
                      ********************* ***************** *  *  *             

consensus_6560#0      GTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGT 600
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      GCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACT 660
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      TTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCA 720
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      CTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAAT 780
consensus_6560#1      ------------------------------------------------------------
                                                                                  

consensus_6560#0      A 781
consensus_6560#1      -
                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)