These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence [TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA] [+] EMBL CD178123 [TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTA ] [+] EMBL CD067049 [ CTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA] consensusID : consensus_6560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 195 fasta sequence [TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG] [-] EMBL CD129590 [TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCT ] [-] EMBL CD129577 [ GCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6560#0 TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTA 60 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 CAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCA 120 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 AACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGT 180 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 ACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAAT 240 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 CCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGAT 300 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 TTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATG 360 consensus_6560#1 ----------------------------------TGGCAATGAAAGTACATCAGTTGATG 26 ** *********************** consensus_6560#0 AGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGA 420 consensus_6560#1 AGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGA 86 ****************************** ********************** ****** consensus_6560#0 GAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 480 consensus_6560#1 GAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 146 ****** ***************************************************** consensus_6560#0 ATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCAC 540 consensus_6560#1 ATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG----------- 195 ********************* ***************** * * * consensus_6560#0 GTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGT 600 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 GCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACT 660 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 TTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCA 720 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 CTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAAT 780 consensus_6560#1 ------------------------------------------------------------ consensus_6560#0 A 781 consensus_6560#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||