|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6560#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 781 fasta sequence
[TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA]
[+] EMBL CD178123 [TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTACAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCAAACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGTACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAATCCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGATTTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTA ]
[+] EMBL CD067049 [ CTGACAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCACGTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGTGCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACTTTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCACTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAATA]
consensusID : consensus_6560#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 195 fasta sequence
[TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG]
[-] EMBL CD129590 [TGGCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGAGAATAAATGTTATCT ]
[-] EMBL CD129577 [ GCAATGAAAGTACATCAGTTGATGAGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGAGAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAATATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6560#0 TTCTGTAATTGGTCTTACACACATAAAATTCCGTTGTTCTGGGTTTCTAACTGCTTCTTA 60
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 CAAAGTCAGTTACATTCAGTCCCTTTTTAATAATGTTGGTGTTCAGTATTCACCGAGCCA 120
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 AACTTAAGATTATGCAGAACTAATTATGGTGTTTAACACATGCCTAAAATTGTTTATAGT 180
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 ACCCTATTTTCCTATTTTGGGGAAACCACCGTAAAAAACTTTAAGGAAACATCACAAAAT 240
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 CCCAAACATTTTCTAAGGCCTGTGAAAAGTCCTCAAAGTTTTTAGGAAAAACCGCAAGAT 300
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 TTCTCCAAGGTAGTGATATCGGGACTGGTAATTCTGACAATGAAAGTACATCAGTTGATG 360
consensus_6560#1 ----------------------------------TGGCAATGAAAGTACATCAGTTGATG 26
** ***********************
consensus_6560#0 AGGCTCAGAGCCTTTTAAATTAGCTTGTGAACTCCATAGATCTAGTTACCTTTTTAATGA 420
consensus_6560#1 AGGCTCAGAGCCTTTTAAATTAGCTTGTGACCTCCATAGATCTAGTTACCTTTATAATGA 86
****************************** ********************** ******
consensus_6560#0 GAATAATTGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 480
consensus_6560#1 GAATAAATGTTATCTCGCTCTTAGTTCAATTTACTTTTCTGGGAAATAATACTTCAAAAT 146
****** *****************************************************
consensus_6560#0 ATTATTAGTAACTTAAATAGGAAAGACAATGATAACTATAGTCATTGCATCATTAGCCAC 540
consensus_6560#1 ATTATTAGTAACTTAAATAGGGAAGACAATGATAACTATGGGTACCGGG----------- 195
********************* ***************** * * *
consensus_6560#0 GTCAGGAGTAGTTAATATTTCACATCATGTTATCCTTTTTCACTTCAGCTGCATTATAGT 600
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 GCGGTATTCACTGCCTTAACAAGTGCTTAAATGACGTTCATAAAATTGCATGTATTCACT 660
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 TTGCTCGACAGACTGATAGTTTTATTGCTAAAACCCACTGAATTTGACTTTACTGCTGCA 720
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 CTTTTGAACTTGTAGCCTTATGAGTTGCTGATAATGTTCTAAATCCATTGACAGTCGAAT 780
consensus_6560#1 ------------------------------------------------------------
consensus_6560#0 A 781
consensus_6560#1 -
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||