These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6566#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 568 fasta sequence [AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAG-AGATTTTCCATTTCGACCTC-CTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT-GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCA] [+] EMBL CD067402 [AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAG AGATTTTCCATTTCGACCTC CTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGGAAAATACGTGTACCATGGGTA ] [+] EMBL CD083696 [ gCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTTGAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCATGGGAAACTTGTTTTTCCAAGAAGATTTTCCATTTCGACCTCNCTTCAATATACATGATAACACCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAA ] [-] EMBL CD067294 [ TGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTT GGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCA] consensusID : consensus_6566#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GACCGGCAGTTAGGTATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTTGCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATTTAAACGGTTATATATACTCTGCTACAGTT] [+] EMBL CD084425 [GACCGGCAGTTAGGTATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCCGACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATGTTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTAGCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGAATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAATTCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGTGAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTTGCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATTTAAACGGTTATATATACTCTGCTACAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6566#0 AGGCTTTCAAAGGACCCAGTTCCCTATGTAACTGCAGAGCCACTCCCAACTAACTTGTTT 60 consensus_6566#1 ------------------------------------------------------------ consensus_6566#0 GAGTGGCATTATGTTATCAAAGGACCTGCTGATTCACCTTATAAAGGAGGTTATTATCAT 120 consensus_6566#1 ------------------------------------------------------------ consensus_6566#0 GGGAAACTTGTTTTTCCAAGAGATTTTCCATTTCGACCTCCTTCAATATACATGATAACA 180 consensus_6566#1 ------------------------------------------------------------ consensus_6566#0 CCAAACGGTAGATTCGCATGTAATACGAGACTTTGTCTATCAATAAGTGATTTCCATCCC 240 consensus_6566#1 --GACCGGCAGTTAGGTAT-----ACGAGACTTTGTCTATCAATAAGTGATTTCCATCCC 53 * *** ** * * ** ************************************ consensus_6566#0 GACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATG 300 consensus_6566#1 GACACATGGAATCCTGCATGGTCTGTTTCATCTATACTTACGGGCTTATTGAGTTTTATG 113 ************************************************************ consensus_6566#0 TTGGAAAATACGTGTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTA 360 consensus_6566#1 TTGGAAAATACGTTTACCATGGGTAGTGTTGTGACTTCAACAAGCACTAAAAAGCAACTA 173 ************* ********************************************** consensus_6566#0 GCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGA 420 consensus_6566#1 GCTAGAAGCAGTGGCGATTTTAACCTGAAGTCTGAGATTTTCTGTGAATTATTCCCTGGA 233 ************************************************************ consensus_6566#0 ATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAAT 480 consensus_6566#1 ATCGTTAAAGAGATTCGCGAAAATCTGACAGCCGAAGAACTTCGTAATAAACTTTTGAAT 293 ************************************************************ consensus_6566#0 TCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGT 540 consensus_6566#1 TCATCAACTCCACGTCAGTCACAATCTGATGCAAGTACAAATAACTCCGGAGTAAATGGT 353 ************************************************************ consensus_6566#0 GAAAACAGAAATGAGTGGCGTATCTCCA-------------------------------- 568 consensus_6566#1 GAAAACAGAAATGAGTGGCGTATCTCCAAATTATTTGTCCTGATCGTGTTTAGTATATTT 413 **************************** consensus_6566#0 ------------------------------------------------------------ consensus_6566#1 GCTTTTCTTGTACAACTTGTCATGAGATTTCTAGAACCTATTTGATAAGCTATCCATATT 473 consensus_6566#0 ----------------------------- consensus_6566#1 TAAACGGTTATATATACTCTGCTACAGTT 502 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||