These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6580#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 910 fasta sequence [TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTAGAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCATGATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAACCGGATATTGTTTGGCCAATCAAAAGTTT-ACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTG-AATCCTGTTGATAGATCACCATTGAAAGCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTTTCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTGTCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATCGGTTGTACTCGAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCATTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAATATAAGGAAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTTATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAATGTTAGTTTTC] [-] EMBL CD187435 [TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTAGAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCATGATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAACCGGATATTGTTTGGCCAATCAAAAGTTTCACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTG AATCCTGTTG ] [+] EMBL CD166286 [ TATTATTTGGCCAATCAAAAGTTT ACATTAGTCCCATTAAGTAATTCTGACGAGGAACCAGGACGATTAATATATTTGTCAAACATTTGAAATCCTGTTGATAGATCACCATTGAAAGCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTTTCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTGTCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATC ] [-] EMBL AI976811 [ TCATCTTCATTAGACAATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGATGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAGCAAGGAGTATATTCGAATGATTGAATTTTAACAAGATTCACACCATTCTCATCGGTTGTACTCGAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCATTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAATATAAGGAAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTTATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAATGTTAGTTTTC] consensusID : consensus_6580#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [GAGAAGTTGAGAATCGTAAACAGCCCAAATAATACAATCACCATCAACTGAACCAGTTATACAGAGTTGTAAATTCTTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTGAAGAGTTGGTTTACATAATGAAGAATTATTCGATAAAGGCAAATCCCATAGTCGAATATCACAGCCAATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA] [+] EMBL CD068240 [GAGAAGTTGAGAATCGTAAACAGCCCAAATAATACAATCACCATCAACTGAACCAGTTATACAGAGTTGTAAATTCTTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTGAAGAGTTGGTTTACATAATGAAGAATTATTCGATAAAGGCAAATCCCATAGTCGAATATCACAGCCAATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6580#0 TAGAATCACAATTTTGACCAGCTACACTGATAAGTAATGTATCATCATTATTTGAATTTA 60 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 GAGGCTTTGTACAACTTAATCCACACGGAATTAGGCCAGCATGACCACTTAGAGTAGCAT 120 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 GATATCCTGTAAGTGACGGTTCATACACTCGAAATTGAAACTCTTGAATATTACGTGAAC 180 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 CGGATATTGTTTGGCCAATCAAAAGTTTACATTAGTCCCATTAAGTAATTCTGACGAGGA 240 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 ACCAGGACGATTAATATATTTGTCAAACATTTGAATCCTGTTGATAGATCACCATTGAAA 300 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 GCAACATTATTACATTTATCCACAGTCATTAAATCTTTCTCTGAGCATTGACTTGGTGTT 360 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 TCATCGGAACCCTCGTCCATTAATTCATCATAATCAGAAGTTCCTTTCATGCTATTTTTG 420 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 TCTCCAAACAAATTTTCATCCGTAATACCATGATGCTGTGAACTGTCATCTTCACTAGAC 480 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 AATGGTGAACTTGATCTATTACTGAACTCCAAAGTATCTACCACAGAATCTTCATTTTGA 540 consensus_6580#1 -----------------------------------------------------GAGAAGT 7 * consensus_6580#0 TGAGGTTCTAGTTCATCGCAGGTATTGATGACACTTTCATTGGTCGATGGATTATAACAA 600 consensus_6580#1 TGAGAATCGTAAACAGCCCAAATAATACAATCACCATCA--ACTGAACCAGTTATACAGA 65 **** ** ** * ** ** * *** *** * * ***** * consensus_6580#0 GGAGTATATTCGAATGATTGAATTTTAACAAGATTCACAACATTCTCATCGGTTGTACTC 660 consensus_6580#1 GTTGTAAATTC---TTGTTACATTTAAATAATTAGCACATATAATTGGTCCAGTGTGTTG 122 * *** **** * ** **** ** ** **** * ** *** * consensus_6580#0 GAGTTCAAGTTGTCTAACGGTGATGATATAATCATTTCACTGATAAGTTCAAAATTTCCA 720 consensus_6580#1 AAG----AGTTGGTTTACA-TAATGA-AGAATTATTC----GATAAAGGCAAATCCCATA 172 ** ***** * ** * **** * *** *** ***** **** * consensus_6580#0 TTTTTACCATATCGCCATACACTTATATGACCATTAGATGTAGCAGAAAAAAT-ATAAGG 779 consensus_6580#1 GTCGAATATCACAGCCA-ATGGTTTTAGAATCACAATTTTGACCAGCTACACTGATAA-- 229 * * * **** * ** ** * ** * * * *** * * * **** consensus_6580#0 AAAATTGAAATCAAGTGATTTAATACCAGATTGATCTGAAACAAGTGTTTGTTTCAATTT 839 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 ATATTTCTTTGATTTAATTCTATATAAACGAATTAACTGATCATTACTTCCAACAAGTAA 899 consensus_6580#1 ------------------------------------------------------------ consensus_6580#0 TGTTAGTTTTC 910 consensus_6580#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||