cluster # 6585

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Schistosoma mansoni
cluster # 6585 cluster # 6585 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6585#0 length = 652 sequences # 2

consensus_6585#1 length = 345 sequences # 2

consensusID : consensus_6585#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 652
fasta sequence

                              [ATCTAGTCCATCGAATCGAATGTGACGTACACCTGCATTTTTAAGCAATTCATAGAGTGCTTGATAGTTTGTTCTTTGGTTCGAAGGCAACAGATGATAAGCCAATAAGTCCACTAACAGTACACCAGTCCACTCCGCCGTAGAAATCGCCCCCTCAGACCACGATAAGCCTTTCACATAAGGAATACGTTCTTCTAACTCAGCCATTTTTATATCATACTTGATCATATCTGATCGTCGGTTCCCAGCGCAAACAATGGTGGATACTAAACTTTTATGAGGATAATTCTTCAGAATATCTTCTAATTTTAAAGATAACTTCAGTGGTTGATTGTTAACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGATTGACATTCTGACTTTTCATTTGGTAATCCTTTATGAAGTCTGTATAGAATACTTCGACTGGTTGCGTGTATATTGCAAGGC]

[-] EMBL CD162843             [ATCTAGTCCATCGAATCGAATGTGACGTACACCTGCATTTTTAAGCAATTCATAGAGTGCTTGATAGTTTGTTCTTTGGTTCGAAGGCAACAGATGATAAGCCAATAAGTCCACTAACAGTACACCAGTCCACTCCGCCGTAGAAATCGCCCCCTCAGACCACGATAAGCCTTTCACATAAGGAATACGTTCTTCTAACTCAGCCATTTTTATATCATACTTGATCATATCTGATCGTCGGTTCCCAGCGCAAACAATGGTGGATACTAAACTTTTATGAGGATAATTCTTCAGAATATCTTCTAATTTTAAAGATAACTTCAGTGGTTGATTGTTAACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATT                                                                                                                                           ]
[+] EMBL CD068387             [                                                                                                              CCACTAACAGTACA CAGTCCACTCCGCCGTAGAAATCGCCCCCTCAGACCACGATAAGCCTTTCACATAAGGAATACGTTCTTCTAACTCAGCCATTTTTATATCATACTTGATCATATCTGATCGTCGGTTCCCAGCGCAAACAATGGTGGATACTAAACTTTTATGAGGATAATTCTTCAGAATATCTTCTAATTTTAAAGATAACTTCAGTGGTTGATTGTTAACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAGGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGATTGACATTCTGACTTTTCATTTGGTAATCCTTTATGAAGTCTGTATAGAATACTTCGACTGGTTGCGTGTATATTGCAAGGC]




>consensus_6585#0
ATCTAGTCCATCGAATCGAATGTGACGTACACCTGCATTTTTAAGCAATTCATAGAGTGC
TTGATAGTTTGTTCTTTGGTTCGAAGGCAACAGATGATAAGCCAATAAGTCCACTAACAG
TACACCAGTCCACTCCGCCGTAGAAATCGCCCCCTCAGACCACGATAAGCCTTTCACATA
AGGAATACGTTCTTCTAACTCAGCCATTTTTATATCATACTTGATCATATCTGATCGTCG
GTTCCCAGCGCAAACAATGGTGGATACTAAACTTTTATGAGGATAATTCTTCAGAATATC
TTCTAATTTTAAAGATAACTTCAGTGGTTGATTGTTAACCTTTATAACAGAAGAATCTAT
TTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAA
TAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAA
AGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATC
TTCATTATTTTCTTCTTCGATAAAGTCCGATTGACATTCTGACTTTTCATTTGGTAATCC
TTTATGAAGTCTGTATAGAATACTTCGACTGGTTGCGTGTATATTGCAAGGC

consensusID : consensus_6585#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 345
fasta sequence

                              [AACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGACTTATCAAGTTCTCCGATATAGTACTTCTCTAGTATTTTTAAAACATGACTCTGGTAATGAAATGCATAAACGGACCAGAATGAAGAGACGTCAGACCCTCCGTCCATCAC]

[+] EMBL CD131895             [AACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGACTTATCAAGTTCTCCGATATAGTACTTCTCTAGTATTTTTAAAACATGACTCTGGTAATGA                                                  ]
[+] EMBL BG931514             [                                             gTCAACATCAGGAACATGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGACTTATCAAGTTCTCCGATATAGTACTTCTCTAGTATTTTTAAAACATGACTCTGGTAATGAAATGCATAAACGGACCAGAATGAAGAGACGTCAGACCCTCCGTCCATCAC]




>consensus_6585#1
AACCTTTATAACAGAAGAATCTATTTCCAGTCTATATGTCTCGGGATCAACATCAGGAAC
AGGAAGGTGGTTTCTTACAAAAAATAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGA
TGGAAGAGGAGTTTCCGCATTAAAAGGACGTTGCGAAACTACTTTCAAATCGGGATTTCT
CTGAGGATCAGAACCATATATATCTTCATTATTTTCTTCTTCGATAAAGTCCGACTTATC
AAGTTCTCCGATATAGTACTTCTCTAGTATTTTTAAAACATGACTCTGGTAATGAAATGC
ATAAACGGACCAGAATGAAGAGACGTCAGACCCTCCGTCCATCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6585#0      ATCTAGTCCATCGAATCGAATGTGACGTACACCTGCATTTTTAAGCAATTCATAGAGTGC 60
consensus_6585#1      ------------------------------------------------------------
                                                                                  

consensus_6585#0      TTGATAGTTTGTTCTTTGGTTCGAAGGCAACAGATGATAAGCCAATAAGTCCACTAACAG 120
consensus_6585#1      ------------------------------------------------------------
                                                                                  

consensus_6585#0      TACACCAGTCCACTCCGCCGTAGAAATCGCCCCCTCAGACCACGATAAGCCTTTCACATA 180
consensus_6585#1      ------------------------------------------------------------
                                                                                  

consensus_6585#0      AGGAATACGTTCTTCTAACTCAGCCATTTTTATATCATACTTGATCATATCTGATCGTCG 240
consensus_6585#1      ------------------------------------------------------------
                                                                                  

consensus_6585#0      GTTCCCAGCGCAAACAATGGTGGATACTAAACTTTTATGAGGATAATTCTTCAGAATATC 300
consensus_6585#1      ------------------------------------------------------------
                                                                                  

consensus_6585#0      TTCTAATTTTAAAGATAACTTCAGTGGTTGATTGTTAACCTTTATAACAGAAGAATCTAT 360
consensus_6585#1      ------------------------------------AACCTTTATAACAGAAGAATCTAT 24
                                                          ************************

consensus_6585#0      TTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAA 420
consensus_6585#1      TTCCAGTCTATATGTCTCGGGATCAACATCAGGAACAGGAAGGTGGTTTCTTACAAAAAA 84
                      ************************************************************

consensus_6585#0      TAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAA 480
consensus_6585#1      TAAATCAGTAGGAGTAATTGGGTTGCTACCTATTGATGGAAGAGGAGTTTCCGCATTAAA 144
                      ************************************************************

consensus_6585#0      AGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATC 540
consensus_6585#1      AGGACGTTGCGAAACTACTTTCAAATCGGGATTTCTCTGAGGATCAGAACCATATATATC 204
                      ************************************************************

consensus_6585#0      TTCATTATTTTCTTCTTCGATAAAGTCCGATTGACATTCTGACTTTTCATTTGGTAATCC 600
consensus_6585#1      TTCATTATTTTCTTCTTCGATAAAGTCCGACT--TATCAAGTTCTCCGATATAGTACTTC 262
                      ****************************** *   **   *   *   ** * *** * *

consensus_6585#0      TTTATGAAGTCTGTATAGAATACTTCGACTGGTTGCGTGTATATTGCAAGGC-------- 652
consensus_6585#1      TCTAGTA--TTTTTAAAACATGACTCTGGTAATGAAATGCATAA-ACGGACCAGAATGAA 319
                      * **  *  * * ** *  **   **   *  *    ** ***   *    *        

consensus_6585#0      --------------------------
consensus_6585#1      GAGACGTCAGACCCTCCGTCCATCAC 345