cluster # 6596

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Schistosoma mansoni
cluster # 6596 cluster # 6596 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6596#0 length = 784 sequences # 3

consensus_6596#1 length = 426 sequences # 1

consensusID : consensus_6596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 784
fasta sequence

                              [TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGTTCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATATCACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTTGTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATTTTCGT]

[+] EMBL CD191953             [TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD069390             [                                             TGCAA CTGACCAAGTAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAAATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACCAGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATAAACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGTTCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATATCACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCAT                                                                                                                                                                                               ]
[+] EMBL CD185018             [                                                                                                                                                                                                                                                                                                                                                                             CAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTCCAACACCGCGAGCAGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTTGTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATTTTCGT]




>consensus_6596#0
TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAG
TAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAA
ATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACC
AGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATA
AACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGT
TCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATAT
CACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGC
AGCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTGC
TAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCG
AAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCATTTATTTG
ATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGA
ATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTTG
TGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATTT
TCGT

consensusID : consensus_6596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [TCCACAAGCTGAACGTTTTAGTTTCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCAAACCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTTGTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTTCTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT]

[+] EMBL CD095829             [TCCACAAGCTGAACGTTTTAGTTTCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCAAACCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTTGTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTTCTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT]




>consensus_6596#1
TCCACAAGCTGAACGTTTTAGTTTCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTT
AGATTCAAACCGTTCAGCTGCTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGT
ATTTCGAGCCCTTGGCTGCCGAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTG
CTGTAACAACTCATTTATTTGATCAATGATATTACTTGCAGAATCCAAAATACCAGAAAT
GATTGTTTCTGAACGGTTTGAATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGC
GAAACTAAAACGTTCAGCTTGTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGT
TAAACAGCTGTTATGCAGTTCTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAAC
AGACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6596#0      TTCACTCATTACAGCACGATGTGGAAGATGAGATGCGTATACAGATGCAACCTGACCAAG 60
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      TAAGTATTCACTTCCATTAGGACTGAACCATGAACAACTCCAGTTATAATCACTTGATAA 120
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      ATCACACGCTTCAGTATCTGATAATTTATCTGAAGTTGTTTTGTCTATACACCTATCACC 180
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      AGTACCCATTAGTAGTGAATGAGAGAGGGAATGAGGTATTATGCAACAAAAAGAAGGATA 240
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      AACACTGAGGGTGAATTCGTAGGTGGCTTCTGTTAGTTTATGGGGACAACTGTCATAAGT 300
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      TCGCGATCTAATTTTGTCTGCATAGTTAGCAGATTTTGTGGACCGGTACAGCTGAGATAT 360
consensus_6596#1      ------------------------------------------------------------
                                                                                  

consensus_6596#0      CACTGCAGACGAAATTTGTTCGTGAGAATCCGTGAAAGTCACATGTTCAACACCGCGAGC 420
consensus_6596#1      -------------------------------------TCCACAAGCTGAACGTTTTAGTT 23
                                                             **** * * ***         

consensus_6596#0      A-GCTCCCCTCAAAAGGCCAATAAGAGTAGGAGCAAGGAACGTACATAGTCGTTCAGCTG 479
consensus_6596#1      TCGCTCTTTCTAGTCTACTGACTCAAATCGCTCTCTTAGATTCA---AACCGTTCAGCTG 80
                        ****     *     *  *    * * *         *   *   *  **********

consensus_6596#0      CTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCC 539
consensus_6596#1      CTAACTGTTGGCCTTGAACTTTTACAGCGTCAGGTGAAGTATTTCGAGCCCTTGGCTGCC 140
                      ************************************************************

consensus_6596#0      GAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACGACTCATTTATTT 599
consensus_6596#1      GAAGAAATGCTGAAACAGCAGCGAAACGATCCAAGGGCTGCTGTAACAACTCATTTATTT 200
                      *********************************************** ************

consensus_6596#0      GATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTG 659
consensus_6596#1      GATCAATGATATTACTTGCAGAATCCAAAATACCAGAAATGATTGTTTCTGAACGGTTTG 260
                      ************************************************************

consensus_6596#0      AATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACATTCAGCTT 719
consensus_6596#1      AATCTAAGAGAGCGATTTGAGTCAGTAGACTAGAAAGAGCGAAACTAAAACGTTCAGCTT 320
                      *************************************************** ********

consensus_6596#0      GTGGAAGTTTTTGAAAGTCAGAGCTGACAATATAATCTGTTACATAGCTTTTATGCAATT 779
consensus_6596#1      GTGGAAGTTTTAGAAAGTCATAGCTGACAATATTATATGTTAAACAGCTGTTATGCAGTT 380
                      *********** ******** ************ ** ***** * **** ******* **

consensus_6596#0      TTCGT----------------------------------------- 784
consensus_6596#1      CTCGTAGCACACTGAGCAGAACGCATATTAACTTGACAACAGACCT 426
                       ****