|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 938 fasta sequence
[TCATAAAGCTTATAAGGG-TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC]
[+] EMBL CD069574 [TCATAAAGCTTATAAGGG TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGAT ]
[+] EMBL CD079466 [ aatAGCTTATAAGGGATCGTGAGGCATATCCATTACGACCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCACCGCGTACACCTTGTGGTTTTGCGACGGTTTCATATGTTACGAAACATACTTTGGAATATAAAATGGAGTCATTTTTCCTATCAGAAACAACACAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCATTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCACGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGATGCTTTGCTCCTCAATTACATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGATCTCTGATTCTAATCATTTAAAAATGCCAAATCATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC]
consensusID : consensus_6598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence
[CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA]
[+] EMBL CD083735 [CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCAT ]
[-] EMBL CD073738 [ TTTCAGTGAACATGTTCAATCTCACCTTGGTTATTCATCAAGTGATGTTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6598#0 TCATAAAGCTTATAAGGGTCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCAT 60
consensus_6598#1 ------------------------------------------------------------
consensus_6598#0 TCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTT 120
consensus_6598#1 ------------------------------------------------------------
consensus_6598#0 GACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTAC 180
consensus_6598#1 --------------------------------------CCTCGA-GGCCAGAATCGGCAC 21
*** ** * * **
consensus_6598#0 GAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 240
consensus_6598#1 GAGG------TTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 75
** **************************************************
consensus_6598#0 ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 300
consensus_6598#1 ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 135
************************************************************
consensus_6598#0 AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 360
consensus_6598#1 AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 195
************************************************************
consensus_6598#0 CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 420
consensus_6598#1 CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 255
************************************************************
consensus_6598#0 AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 480
consensus_6598#1 AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 315
************************************************************
consensus_6598#0 AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 540
consensus_6598#1 AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 375
************************************************************
consensus_6598#0 TGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTA 600
consensus_6598#1 TGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTA 435
************************* ****************************** **
consensus_6598#0 TTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGA 660
consensus_6598#1 TTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAA 495
***************************** *************** **** *** ** *
consensus_6598#0 TGTA-TATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAAT-ACTGAAT 718
consensus_6598#1 GGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAAT 555
*** **** ***** *** ********* *** * **** * ******* * * ***
consensus_6598#0 GCTCAGTTTTAGAGGATGAAACAGAACATGG-ATCCTACATAAAATCA-CTTTGTGGATT 776
consensus_6598#1 CCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATT 615
************* ****** * * *** * ** ***** *** *** ******
consensus_6598#0 AACCAAACTCCATACTACTTGC-----CATATCGT--ATTCGAA---CGATTG---TTAT 823
consensus_6598#1 CAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTAT 675
* * *** * * **** * ****** * *** ** ***** ****
consensus_6598#0 CCGA--TATTA-------CACAGCTATACGTTTTACTTCTTTCTAGTCCATTGAC--GTT 872
consensus_6598#1 CCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTT 735
*** ***** ** * ******** *** * * ** * ***
consensus_6598#0 CGGTAATTTTGTTGNAG---TTTTCAGTACTACTAACCTCC-CGTTGGATTTGTTTATCG 928
consensus_6598#1 TAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTT 795
* **** ** ** ***** *** * * * * * *** * *****
consensus_6598#0 AAAAATTCCC-------------------------------------------------- 938
consensus_6598#1 AAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAAC 855
***** **
consensus_6598#0 ----------------
consensus_6598#1 ATGGTTCATATTCAGA 871
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||