These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 938 fasta sequence [TCATAAAGCTTATAAGGG-TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC] [+] EMBL CD069574 [TCATAAAGCTTATAAGGG TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGAT ] [+] EMBL CD079466 [ aatAGCTTATAAGGGATCGTGAGGCATATCCATTACGACCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCACCGCGTACACCTTGTGGTTTTGCGACGGTTTCATATGTTACGAAACATACTTTGGAATATAAAATGGAGTCATTTTTCCTATCAGAAACAACACAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCATTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCACGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGATGCTTTGCTCCTCAATTACATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGATCTCTGATTCTAATCATTTAAAAATGCCAAATCATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC] consensusID : consensus_6598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 871 fasta sequence [CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA] [+] EMBL CD083735 [CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCAT ] [-] EMBL CD073738 [ TTTCAGTGAACATGTTCAATCTCACCTTGGTTATTCATCAAGTGATGTTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6598#0 TCATAAAGCTTATAAGGGTCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCAT 60 consensus_6598#1 ------------------------------------------------------------ consensus_6598#0 TCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTT 120 consensus_6598#1 ------------------------------------------------------------ consensus_6598#0 GACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTAC 180 consensus_6598#1 --------------------------------------CCTCGA-GGCCAGAATCGGCAC 21 *** ** * * ** consensus_6598#0 GAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 240 consensus_6598#1 GAGG------TTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 75 ** ************************************************** consensus_6598#0 ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 300 consensus_6598#1 ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 135 ************************************************************ consensus_6598#0 AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 360 consensus_6598#1 AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 195 ************************************************************ consensus_6598#0 CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 420 consensus_6598#1 CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 255 ************************************************************ consensus_6598#0 AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 480 consensus_6598#1 AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 315 ************************************************************ consensus_6598#0 AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 540 consensus_6598#1 AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 375 ************************************************************ consensus_6598#0 TGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTA 600 consensus_6598#1 TGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTA 435 ************************* ****************************** ** consensus_6598#0 TTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGA 660 consensus_6598#1 TTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAA 495 ***************************** *************** **** *** ** * consensus_6598#0 TGTA-TATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAAT-ACTGAAT 718 consensus_6598#1 GGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAAT 555 *** **** ***** *** ********* *** * **** * ******* * * *** consensus_6598#0 GCTCAGTTTTAGAGGATGAAACAGAACATGG-ATCCTACATAAAATCA-CTTTGTGGATT 776 consensus_6598#1 CCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATT 615 ************* ****** * * *** * ** ***** *** *** ****** consensus_6598#0 AACCAAACTCCATACTACTTGC-----CATATCGT--ATTCGAA---CGATTG---TTAT 823 consensus_6598#1 CAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTAT 675 * * *** * * **** * ****** * *** ** ***** **** consensus_6598#0 CCGA--TATTA-------CACAGCTATACGTTTTACTTCTTTCTAGTCCATTGAC--GTT 872 consensus_6598#1 CCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTT 735 *** ***** ** * ******** *** * * ** * *** consensus_6598#0 CGGTAATTTTGTTGNAG---TTTTCAGTACTACTAACCTCC-CGTTGGATTTGTTTATCG 928 consensus_6598#1 TAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTT 795 * **** ** ** ***** *** * * * * * *** * ***** consensus_6598#0 AAAAATTCCC-------------------------------------------------- 938 consensus_6598#1 AAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAAC 855 ***** ** consensus_6598#0 ---------------- consensus_6598#1 ATGGTTCATATTCAGA 871 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||