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Schistosoma mansoni
cluster # 6598 cluster # 6598       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6598#0 length = 938 sequences # 2  
consensus_6598#1 length = 871 sequences # 2  

consensusID : consensus_6598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 938
fasta sequence
                              [TCATAAAGCTTATAAGGG-TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC]

[+] EMBL CD069574             [TCATAAAGCTTATAAGGG TCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTACGAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGAT                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD079466             [   aatAGCTTATAAGGGATCGTGAGGCATATCCATTACGACCAGAATTAATTGAATCCATTCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTTGACTTCGATTGAAGTCTCACCGCGTACACCTTGTGGTTTTGCGACGGTTTCATATGTTACGAAACATACTTTGGAATATAAAATGGAGTCATTTTTCCTATCAGAAACAACACAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCATTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCACGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGATGCTTTGCTCCTCAATTACATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGATCTCTGATTCTAATCATTTAAAAATGCCAAATCATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTATTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGATGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGCTCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACCAAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTATACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACTACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC]


>consensus_6598#0 TCATAAAGCTTATAAGGGTCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCAT TCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTT GACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTAC GAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT TGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTA TTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGA TGTATATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAATACTGAATGC TCAGTTTTAGAGGATGAAACAGAACATGGATCCTACATAAAATCACTTTGTGGATTAACC AAACTCCATACTACTTGCCATATCGTATTCGAACGATTGTTATCCGATATTACACAGCTA TACGTTTTACTTCTTTCTAGTCCATTGACGTTCGGTAATTTTGTTGNAGTTTTCAGTACT ACTAACCTCCCGTTGGATTTGTTTATCGAAAAATTCCC



consensusID : consensus_6598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 871
fasta sequence
                              [CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA]

[+] EMBL CD083735             [CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCAT                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD073738             [                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCAGTGAACATGTTCAATCTCACCTTGGTTATTCATCAAGTGATGTTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAACATGGTTCATATTCAGA]


>consensus_6598#1 CCTCGAGGCCAGAATCGGCACGAGGTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGA AACAACAAAATATTTATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGG TGAAAAAACATCATTAGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATC AGGTGGTTACATTTTCAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTG CTTTGCTCCTCAATTAGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGA TTCTAATCATTTAAAAATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGA TCAAATTACAGAAATTGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCA ATCTCAACTTGGTTATTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATC TAATTGTTTTAATAAGGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTC GCGAAATTATTAAATCCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAAT TCAGTTTTTTGGATTCAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAA ACCGATTTGGTTTATCCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTT ATAGGTTCTCAAGTTTAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAA TGGTATACTTTATTTAAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAA AAATATAAAATAAACATGGTTCATATTCAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6598#0      TCATAAAGCTTATAAGGGTCGTGATGGATATCCATTAGGAGCAGAATTAATTGAATCCAT 60
consensus_6598#1      ------------------------------------------------------------
                                                                                  

consensus_6598#0      TCTCTACGTATATCGTGCTACACGTGATCCTGCTCTGATTGATATGGGTGTGGATATTTT 120
consensus_6598#1      ------------------------------------------------------------
                                                                                  

consensus_6598#0      GACTTCGATTGAAGTCTCAGCGCGTACACCTTGTGGTTTTGCGACGGTTTCAGATGTTAC 180
consensus_6598#1      --------------------------------------CCTCGA-GGCCAGAATCGGCAC 21
                                                               *** **    *   *  **

consensus_6598#0      GAAACATACTTTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 240
consensus_6598#1      GAGG------TTGGAAGATAGAATGGAGTCATTTTTCCTATCAGAAACAACAAAATATTT 75
                      **        **************************************************

consensus_6598#0      ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 300
consensus_6598#1      ATACCTATTATTTGATGAAAATAACTTCATACATCAGTTACCAGGTGAAAAAACATCATT 135
                      ************************************************************

consensus_6598#0      AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 360
consensus_6598#1      AGAAGGTTCTCGTTTACCGTCAGGACTTCAATGTTTTCCAGAATCAGGTGGTTACATTTT 195
                      ************************************************************

consensus_6598#0      CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 420
consensus_6598#1      CAATACAGAAGCTCATCCCATTGATCCTGGTGCTTTGAATTGTTGCTTTGCTCCTCAATT 255
                      ************************************************************

consensus_6598#0      AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 480
consensus_6598#1      AGATGAAGTTGAACAAGCATCCAAAGTTGAAACATTGTTCTCTGATTCTAATCATTTAAA 315
                      ************************************************************

consensus_6598#0      AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 540
consensus_6598#1      AATGCCAAATAATCGTGAATTTGACAGCGATACTAATACATCTGATCAAATTACAGAAAT 375
                      ************************************************************

consensus_6598#0      TGATTTACTTTCTACCATTGATTCATCTTTCAGTGAACATGTTCAATCTCAACTTGGGTA 600
consensus_6598#1      TGATTTACTTTCTACCATTGATTCAGTTTTCAGTGAACATGTTCAATCTCAACTTGGTTA 435
                      *************************  ****************************** **

consensus_6598#0      TTCATCAAGTGATGCTTTCACTTGGATAACTAATCAGTCATCATCTGATTGCTTTGATGA 660
consensus_6598#1      TTCATCAAGTGATGCTTTCACTTGGATAATAAATCAGTCATCATCTAATTGTTTTAATAA 495
                      *****************************  *************** **** *** ** *

consensus_6598#0      TGTA-TATTCTGATTCTAAGTTAATTGTTTACTGCATAGAACGTAGCGAAAT-ACTGAAT 718
consensus_6598#1      GGTAGTATTTTGATTTTAATTTAATTGTTCCCTGAACAGAATTTCGCGAAATTATTAAAT 555
                       *** **** ***** *** *********  *** * ****  * ******* * * ***

consensus_6598#0      GCTCAGTTTTAGAGGATGAAACAGAACATGG-ATCCTACATAAAATCA-CTTTGTGGATT 776
consensus_6598#1      CCTCAGTTTTAGAGAATGAAAAAAACAATGATAAATTAAATAAATTCAGTTTTTTGGATT 615
                       ************* ****** * *  ***  *   ** ***** ***  *** ******

consensus_6598#0      AACCAAACTCCATACTACTTGC-----CATATCGT--ATTCGAA---CGATTG---TTAT 823
consensus_6598#1      CAACCAACCCTCCATTACTCACTTGCCCATATCCTTCATTTCAAAACCGATTTGGTTTAT 675
                       * * *** *   * ****  *     ****** *  ***  **   *****    ****

consensus_6598#0      CCGA--TATTA-------CACAGCTATACGTTTTACTTCTTTCTAGTCCATTGAC--GTT 872
consensus_6598#1      CCGGATTATTAACATCAACATAATCCCGTTTTTTACTTTTTTTTTATAGGTTCTCAAGTT 735
                      ***   *****       ** *        ******** *** *  *   **  *  ***

consensus_6598#0      CGGTAATTTTGTTGNAG---TTTTCAGTACTACTAACCTCC-CGTTGGATTTGTTTATCG 928
consensus_6598#1      TAATGGTTTTCGTGAAGAAATTTTCTGTATAGTCAGCTTTCTCAATGGTATACTTTATTT 795
                         *  ****  ** **   ***** ***     * * * * *  ***  *  *****  

consensus_6598#0      AAAAATTCCC-------------------------------------------------- 938
consensus_6598#1      AAAAAACTCCTCCCATTTGGCAATTTCTGTGATATTTATTTTGAAAAATATAAAATAAAC 855
                      *****   **                                                  

consensus_6598#0      ----------------
consensus_6598#1      ATGGTTCATATTCAGA 871
                                      




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)