cluster # 660

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Schistosoma mansoni
cluster # 660 cluster # 660 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_660#0 length = 450 sequences # 1

consensus_660#1 length = 342 sequences # 1

consensusID : consensus_660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [TGGAATTAAATGNTGACGTACCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGGAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTCTGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTCAGTAATGCTGGGCAAATTGCACCTCCATGCTGGGTTCTCACTGACTTTAGATATTGTATATTTTTAGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAGATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG]

[+] EMBL AI964730             [TGGAATTAAATGNTGACGTACCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGGAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTCTGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTCAGTAATGCTGGGCAAATTGCACCTCCATGCTGGGTTCTCACTGACTTTAGATATTGTATATTTTTAGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAGATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG]




>consensus_660#0
TGGAATTAAATGNTGACGTACCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGGAA
AAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAG
GAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTCTGA
GACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGATGC
CCCTAGCTCCTATTGCTCCCACCTCAGTAATGCTGGGCAAATTGCACCTCCATGCTGGGT
TCTCACTGACTTTAGATATTGTATATTTTTAGTTTTTTGAGACAGGGTTTCTCTGTGTAG
CCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAGATTTGCCT
GTCTCTGCTTTCTGAGGTTCTGGGATTAAG

consensusID : consensus_660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 342
fasta sequence

                              [TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAGAAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTCTGACTTCCCCTGCTCCCCACCCAAAAAAGAAAGTCTTGTTTCTTGAGACATGGTCTTATGTAAGTAACCACTCTGGGTTTGAATCCCATCCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATGGTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA]

[+] EMBL AI974212             [TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAGAAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACAGAGGAGATCTTCTGACTTCCCCTGCTCCCCACCCAAAAAAGAAAGTCTTGTTTCTTGAGACATGGTCTTATGTAAGTAACCACTCTGGGTTTGAATCCCATCCATAGCCAAGGATGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATGGTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA]




>consensus_660#1
TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAG
AAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACA
GAGGAGATCTTCTGACTTCCCCTGCTCCCCACCCAAAAAAGAAAGTCTTGTTTCTTGAGA
CATGGTCTTATGTAAGTAACCACTCTGGGTTTGAATCCCATCCATAGCCAAGGATGCCCC
TAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATGGTGGGT
TCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_660#0      TGGAATTAAATGN-TGACGTA-CCAACTCCTGGCAAGAATACTGTATACTTAAAACAAGG 58
consensus_660#1      TGGAATTAAATGCGTGACGTAACCAACTCCTGGCAAGAATACTGTATACTTAAAAAAAAG 60
                     ************  ******* ********************************* ** *

consensus_660#0      AAAAAA-GAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACA 117
consensus_660#1      AAAAAAAGAAAAAAAGGAACAAGCCAAAGAGGGAGTAGCATTTTACCTTCTACAGTGACA 120
                     ****** *****************************************************

consensus_660#0      GAGGAGATCTTTCTGACTCTCCCCCTGCTCCCCACCCAAAAAAGAAAAGTCTTGTTTCTC 177
consensus_660#1      GAGGAGATCTT-CTGACTT--CCCCTGCTCCCCACCCAAAAAAGAAA-GTCTTGTTTCT- 175
                     *********** ******   ************************** *********** 

consensus_660#0      TGAGACATGGTCTTATGTAAGTAACCCACTCTGGGTTTGAATCCCATTCATAGCCAAGGA 237
consensus_660#1      TGAGACATGGTCTTATGTAAGTAACC-ACTCTGGGTTTGAATCCCATCCATAGCCAAGGA 234
                     ************************** ******************** ************

consensus_660#0      TGCCCCTAGCTCCTATTGCTCCCACCT-CAGTAATGC-TGGGCAAATTG-CACCTCCATG 294
consensus_660#1      TGCCCCTAGCTCCTATTGCTCCCACCTTCACTAATGCGTGGGCAATTTGGCACTTCCATG 294
                     *************************** ** ****** ******* *** *** ******

consensus_660#0      CTGGGTTCTCACTGACTTTAGATATTGTATATTTTT--AGTTTTTTGAGACAGGGTTTCT 352
consensus_660#1      GTGGGTTCTCACTTGCTTTAGATATTGGAAAATTTTTAAGTTTTTTTA------------ 342
                      ************  ************ * * ****  ******** *            

consensus_660#0      CTGTGTAGCCTTGGTGTCCTGGAACTCATCTTGCAGACCAGGCTGGCCTCAAACTCAGAG 412
consensus_660#1      ------------------------------------------------------------
                                                                                 

consensus_660#0      ATTTGCCTGTCTCTGCTTTCTGAGGTTCTGGGATTAAG 450
consensus_660#1      --------------------------------------