cluster # 6601

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Schistosoma mansoni
cluster # 6601 cluster # 6601 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6601#0 length = 703 sequences # 2

consensus_6601#1 length = 406 sequences # 2

consensusID : consensus_6601#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 703
fasta sequence

                              [AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCAACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATCCAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAAGGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCACTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATGAGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCAATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAATAGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGATCAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA]

[+] EMBL CD122791             [AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCAACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATCCAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTA                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD133921             [                                                                                                                                                                          CTGCATAATCCAATTCAATTAAATGATAAACTTATGATGACTAGTAATTTAATTTCATCAAAATATGAATCAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAATTAAATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAAGGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCACTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATGAGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCAATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAATAGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGATCAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA]




>consensus_6601#0
AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATC
ATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACC
AACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATC
CAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAAT
CAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAAT
TAAATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAAG
GTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCAC
TAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATGA
GACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCAA
TAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAATA
GTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGATC
AAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA

consensusID : consensus_6601#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 406
fasta sequence

                              [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCA]

[-] EMBL CD069775             [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCA]
[+] EMBL CD069768             [GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAATAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTCAAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTATCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCTTATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTACATCACTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACC ]




>consensus_6601#1
GACTTCAAATGAAGTGAATCTATCACCTGATCATCAAATGAATGATGATATAATCATTAA
TAATGATATAAAAGAAGATGATAATGATGATGAAGAAAATGAACATATAGTTGAAGATTC
AAAGTCATCAACCCCAAGATTTCATTCAAAACTTTTGAGACGTGATAGTATGGAATGTTA
TCTTGAAACAAACAAAGCACATGATATACGTCATGAAAGGGATCATCCACTTTCTGATCT
TATTGAAAGTATGAAAGACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGA
CTTTGTAGAGGAAGAAGAAGAAGAAGAAGAAGAAAATACAACATCATCAATTTCAAATTA
CATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6601#0      AATTGCGAAATAATACAAAACTCTTTGAACATAAATATTCATCAGAATATGGACAACATC 60
consensus_6601#1      ------------------------------------------------------------
                                                                                  

consensus_6601#0      ATCAATTTCAAATTACATCATTGTCGAATAGAAAACAACGTCTATTACGTAATCATCACC 120
consensus_6601#1      ------------------------------------------------------------
                                                                                  

consensus_6601#0      AACATCCTCCTCGTGCTCCTCATCCGCCGCCGCCTCCTCCTCCTCATCCTCTGCATAATC 180
consensus_6601#1      ------------------------------------------------------------
                                                                                  

consensus_6601#0      CAATTCAATTAAATGATAAACCTATGATGACTAGTAATTTAATTTCATCAAAATATGAAT 240
consensus_6601#1      ------------------------------------------------------------
                                                                                  

consensus_6601#0      CAAAAAGTCAAAATTATTTAGATTTAAATCAATCACCTAAAATGCGTTTTATACGTAAAT 300
consensus_6601#1      --------------GACTTCAAATGAAGTGAATC---TATCACCTGATCATCAAATGAAT 43
                                     * **  * * ** * ****   **  *   * *    *  * ***

consensus_6601#0      TA-AATACATTTGCTAGTGTACCTGATTTAACTAAAAAACCAATACGTAGTGCATTAAAA 359
consensus_6601#1      GATGATATAATCATTAATAA---TGATATAA--AAGAAGATGATA-ATGATG-ATGAAGA 96
                       *  *** * *   ** *     **** ***  ** **    ***  *  ** ** ** *

consensus_6601#0      GGTAGTAGAAATAGCAGTGTTCATCGATCAATAAATGATCATGAACAAGTTGTCCGATCA 419
consensus_6601#1      AAATGAACATATAGTTGAA------GATTCA-AAGTCATCAACCCCAAGATTTC--AT-- 145
                          * * * ****  *        ***  * ** * ****    **** * **  **  

consensus_6601#0      CTAAATCCTTTAAATTCTGATTCATTTTCATTAACACCACTAATACTAGAAGATGAAATG 479
consensus_6601#1      TCAAAACTTTTGAGACGTGATA-GTATGGAATGTTATC-TTGAAACAAACAAAGCACATG 203
                        *** * *** *    ****   * *  * *   * *  * * ** *  * *  * ***

consensus_6601#0      AGACACTTAGTACATTTACATTCATCAGATCTATCCAATACAATCATGAATATTAAACCA 539
consensus_6601#1      ATATACGTCATGAAA--GGGATCATCCA--CTTTCTGATCTTATTGAAAGTATGAA---A 256
                      * * ** *  *  *       *****    ** **  **   **    * *** **   *

consensus_6601#0      ATAAGTAAAACAGATTATACTGAATGGTTACCAAATAAATTGGATTATTCTAATTCAAAT 599
consensus_6601#1      GACGGTAAACATTGTTATGGTGATTCAACAAATATAAGGACGGACT-TTGTAGAGGAAGA 315
                          *****     ****  *** *    *   *  *    *** * ** **    **  

consensus_6601#0      AGTAAAATATCATCTGAACTTAAAATTGAATATAGTCAGTATTCACCTGAATTCAACGAT 659
consensus_6601#1      AGAAGAAGAAGA----AGAAGAAAATACAACATCATCAATTTCAAATTACATC--ATTGT 369
                      ** * ** *  *    *    *****  ** **  *** * *  *  *  **   *   *

consensus_6601#0      CAAATGGATTAAATAAAACTATNTGGATTATTCTATAAACATAA 703
consensus_6601#1      CGAATAGA-------AAACAACGTCTATTACGTAATCATCACCA 406
                      * *** **       **** *  *  ****    ** * **  *