These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6630#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 983 fasta sequence [GAGCCATATTCGGCACGAGGAG-AAATACAAGAGTGAAGATAAT--CATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCTAAACAAC-ATTTTANTAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTNNAC-AGTATGCAGAAAATAACACTATN] [+] EMBL CD081709 [GAGCCATATTCGGCACGAGGAG AAATACAAGAGTGAAGATAAT CATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCTAAACAAC ATTTTANTAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTNNAC AGTATGCAGAAAATAACACTATN] [+] EMBL CD078526 [ attatctGAGAAAATACAAGAATGAAGATAATCACATTGTTATCCTTCATATTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGTGACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGATGAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCGAACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGACATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGTTCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAACGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATACAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAG ] [-] EMBL CD072995 [ AGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCTTATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATAAAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGATCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTTTACATTCCATCATGTACAACACTTATTTTAAGGATCATAGATGAAGGATTTGTTTATTTATTTTTAATGAAACTAATCCTACTAATATATCTGATCCATCT AACAACAATTTTATAAATCCTAATCAAAATAAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCACAAT AACAAGTATGCAGAAATAAACACTATt] consensusID : consensus_6630#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 380 fasta sequence [AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATCAAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATGAAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAAATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATAACAAGTATGCAGAAATAAACACT] [-] EMBL CD073687 [AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTTTCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTATCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATCAAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATGAAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAAATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATAACAAGTATGCAGAAATAAACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6630#0 GAGCCATATTCGGCACGAGGAGAAATACAAGAGTGAAGATAATCATTGTTATCCTTCATA 60 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 TTCCTACCTACCATACTAAGCAACCACATAGATGAGAGTTCAGATATTAGCAATCGTCGT 120 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 GACTCCTTTGCTACAACAATGAACTCTAATAGATCAGCACACAAGAATGAAAAGAATGAT 180 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 GAAAAACATAGGAGCACATTTGGTGGTGAATTCGACTTATCATGGTTATCAGGAGGATCG 240 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 AACCGAAGATATGCATTTAAAGAAGAGGGAGAAGCAAATGCCAAAGGTAATTTTAATAGA 300 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 CATGGACGAGGGGAATATGACAGTTTATCAACTCGTTCATCCAGATTCAAGGTGAAGGGT 360 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 TCATATGACAAGTATGGAAGACGCACATTCCAATATTCCAAATTGAAGAGAGGTGGAAAA 420 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 CGAAAGAGTTACTCGAAAAGATTTTCCTTTGACAATTTCAATATCAATGGTAATGTATCT 480 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 TATAAACGTAAAAGTATGGGATTAGGATCAAACAGAGAAAATGCTAAACATGTCAAAATA 540 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 AAATTCAGTTTTGATAGTGATTCTGATGGTAAATCTTCAAAAGGAATTACGAATAGTAGA 600 consensus_6630#1 ------------------------------------------------------------ consensus_6630#0 TCTAGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTT 660 consensus_6630#1 ---AGAAGTAGACGTGATGCTGGAGAAGAGGAAAATAATTCTCGTAGGAATAGCTCTCTT 57 ********************************************************* consensus_6630#0 TCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTA 720 consensus_6630#1 TCCTTCTCTGAATTCTAATAATCGAAAATGAAAGATATATATATATATATCCTTTATTTA 117 ************************************************************ consensus_6630#0 TCTACTAAACTGTAGACTACTGTGAGATAATATGTTTAAACCAACACTNTACATTCCATC 780 consensus_6630#1 TCTACTAAACTGTAGACTACTGTGAGATAANAAGGTTAAAAAAACACTTTTCATTTCATC 177 ****************************** * * ***** ****** * **** **** consensus_6630#0 ATGTACAACACTTATTTTAAGG-ATCATAGATGAAGGATTTGTT-TATTTATTTTTAATG 838 consensus_6630#1 AAGTTCNACNNNNCTTTTTATATAAGATAATNNAAAGNNNAGGAGTGAATGTTTTGAATG 237 * ** * ** **** * * *** ** * * * * **** **** consensus_6630#0 AAACTAATCCTACTAATATATCTGATCCATCTAAACAACATTTTANTAATCCTAATCAAA 898 consensus_6630#1 AAACTAATCCTACTAATATATCTGATCCATCTAACAACCATGTTATAAATCCTAAACAAA 297 ********************************** * *** *** ******** **** consensus_6630#0 ATA-AATATTATTTCACATTTAAATTACACTNGACATCATCTGGTTGTGGTGCCACANTN 957 consensus_6630#1 ATAGAATATTATTTCACATTTAAATTACACTGAACATCATCTGTTTGTGGTGCCCCAATA 357 *** *************************** ********** ********** ** * consensus_6630#0 NACAGTATGCAGAAAATAACACTATN 983 consensus_6630#1 ACAAGTATGCAGAAATAAACACT--- 380 ************ ****** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||