These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6637#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGATGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAGTATCAAAAGGAATAAAAATACCAGAAGCGCATCA] [+] EMBL CD078693 [AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGATGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAGTATCAAAAGGAATAAAAATACCAGAAGCGCATCA] consensusID : consensus_6637#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence [TGAAAAGAGAAAATAAGTTAGATGGTCAGTATCTAAAGGAAAAAAAATACCAGAAGCGCGACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACCTAT] [-] EMBL CD073156 [TGAAAAGAGAAAATAAGTTAGATGGTCAGTATCTAAAGGAAAAAAAATACCAGAAGCGCGACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGTAAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTGGAAAATGAAATGAATAAAACCTAT] consensusID : consensus_6637#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [CGAATACTAGACGAGGAGGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAAAAGTGACGAATCAGAAGAGAACAAGTGAGGAGAAGGGAAGAAGAGAAGGTGAGTAAATCGCCCCGAGGGTGAGGATAGAACTTAGAAAGCTGGTGGATAATCAAGGGGAAATGATTGAAAAACC] [+] EMBL CD077824 [CGAATACTAGACGAGGAGGCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAAAAGTGACGAATCAGAAGAGAACAAGTGAGGAGAAGGGAAGAAGAGAAGGTGAGTAAATCGCCCCGAGGGTGAGGATAGAACTTAGAAAGCTGGTGGATAATCAAGGGGAAATGATTGAAAAACC] consensusID : consensus_6637#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGAAAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAA] [+] EMBL CD088493 [AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGAAAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGATAAGAAATTAATACCAACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAACAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAAATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTTGTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6637#1 ------------------------------------------------------------ consensus_6637#2 ------------------------------------------------------------ consensus_6637#0 ---------AAAAGTATCAAATGATGTTTATGAAGAAAGGAAAGGAAAGATGAGGATAAG 51 consensus_6637#3 AGCCATAAGTCAGACAAAGAAGGACCACTATCAAAAACAATAAAAGATGACACAGAAGGA 60 consensus_6637#1 -------------------------------------------------TGAAAAGAGAA 11 consensus_6637#2 ------------------------------------------CGAATACTAGACGAGGAG 18 consensus_6637#0 AAATTAATACCAACGAAGGGCCAGACGCAAAAAGGAATGAAAACGAAACTAGACGAGGAT 111 consensus_6637#3 AAAGAAATGAGCATGAATAAAAGAGATGGAGAAGGATATAAAGAAGGGAAAGATGAGGAT 120 * ** consensus_6637#1 AATAAGTTAGAT----GGTCAGTATC-TAAAGGAAAAAAAATACCAGAAGCGCGACAGAA 66 consensus_6637#2 GCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAA 78 consensus_6637#0 GCTGAATTAAAACCTGAATCAGAAACATCTCGGAAAAAAAATACCAGAAGCGCAACAGAA 171 consensus_6637#3 AAGAAATTAATACC--AACGAAGGGCCAGACGCAAAAAAAATACCAGAAGCGCAACAGAA 178 * *** * * * ******************** ****** consensus_6637#1 CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 126 consensus_6637#2 CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 138 consensus_6637#0 CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 231 consensus_6637#3 CAAATAAAAGAAACAAGACAAAAGAAAGAAATCAAAACGATCCTTGAAACTGATTCCGAA 238 ************************************************************ consensus_6637#1 ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 186 consensus_6637#2 ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 198 consensus_6637#0 ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 291 consensus_6637#3 ATGAGAACGGTAGGTGAAGTTAGTAGGGGAGAAAAAGATAGTGAAGAAAACGAAGCAGTT 298 ************************************************************ consensus_6637#1 GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 246 consensus_6637#2 GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAGGNAAAAAGAAAGAAA 258 consensus_6637#0 GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 351 consensus_6637#3 GTTAGGTCAAGTGAAACATTTGAGCCACCTAGTGACGATAAGCAAGGAAAAAGAAAGAAA 358 ******************************************** * ************* consensus_6637#1 AAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGT 306 consensus_6637#2 AA-GTGACGAA-TCAGAAGAGAAC--AAGTGAGGAGAA-GGGAAGAAGAGAAGGTGA-GT 312 consensus_6637#0 AAAGTGACGAAATCAGAAGAGAAACAAAGTGAGGAGAAAGGAAAGAAGAGAAGGGGAAGT 411 consensus_6637#3 AA---------------------------------------------------------- 360 ** consensus_6637#1 AAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTG 366 consensus_6637#2 AAATCGCCCC--GAGGGTGAGGATA-GAACTTAGAAA-GCTGGTGGAT--AATCAAG--G 364 consensus_6637#0 AAATCGTCCCCGAAGGATGATGATAAGAACATAGAAAAGCTAGTTGATCAAATCAAAGTG 471 consensus_6637#3 ------------------------------------------------------------ consensus_6637#1 GAAAATGAAATGAATAAAACCTAT------------------------------------ 390 consensus_6637#2 GGAAATGAT-TGAA--AAACC--------------------------------------- 382 consensus_6637#0 GAAAATGAAATGAATAAAACAAAACAAACGCTGAAAAAAGAAAATAAGTTAGATGGTCAG 531 consensus_6637#3 ------------------------------------------------------------ consensus_6637#1 ---------------------------------- consensus_6637#2 ---------------------------------- consensus_6637#0 TATCAAAAGGAATAAAAATACCAGAAGCGCATCA 565 consensus_6637#3 ---------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||