These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6646#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 687 fasta sequence [CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGT-AAATGAACTTAATAT-ATCTTT] [+] EMBL CD082825 [CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCACAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCACCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTCGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCACAGATATGAAGATCATTATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGT AAATGAACTTAATAT ATCTT ] [-] EMBL CD076413 [ GGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTCATTGGATATCAGCACCGGTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAGAGAACGAAGTTTGTTTATTGGTTAGCCAAGTACAAGGTAGAGACTTTATCACTTCAGCCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTAACTGCTACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGAACTGATGCATTAAAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGTAAAATGAACTTAATATAATCTTT] [-] EMBL CD073410 [ GACTTTATCACTTCAGCCCAATATGGTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCTCATTTAATGAGATTGGTAACCCCCCCCAACCCCCGAATTTTGAAAATAACCTAACTGCTACAGTGAGTGAAGTGGGTATATGGATCCACCAAATAATAGACGACAGCTAGTCAGAATTCATCCCAGATATGAAGATCATAATATATATTTTTTGGGACTGATGCATTAAAAAAGACTA ] consensusID : consensus_6646#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CGTGAAGTCAGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTCTAGTCCGGAAATACGAAGAGGTTTATGTAAATATGACAATAATGATTCTCTAATACGAGATGTATATCAGTTTCCCCTTTCTCCAGACATCAAGAACTCTACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCTATATGTGAGTTTGAGAGAGATTTTCAAATGCTCAGATTCGCCGTCTTATAATAGTTCACTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGCTCAAGTTTACTTGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAG] [+] EMBL CD078956 [CGTGAAGTCAGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTCTAGTCCGGAAATACGAAGAGGTTTATGTAAATATGACAATAATGATTCTCTAATACGAGATGTATATCAGTTTCCCCTTTCTCCAGACATCAAGAACTCTACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCTATATGTGAGTTTGAGAGAGATTTTCAAATGCTCAGATTCGCCGTCTTATAATAGTTCACTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGCTCAAGTTTACTTGGTAATTCTGATGAAACGATGTATCCCAATATTTTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCACTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6646#0 CCTCCGAGCCAATAATTCGGCACGAGGGGTAATTCTGATGAAACGATGTATCCCAATATT 60 consensus_6646#1 -----------------------------------------------------------C 1 consensus_6646#0 TTGAAATTGAAAGGAATACCAGAGATTTCCATAAGCCACATTCCTGAAAGTGAACAATCA 120 consensus_6646#1 GTGAAGTC-AGCGAAATTTTGGTCATGAACAAAGACTATGATTGTGAAGATTTGAACTC- 59 **** * * * *** * ** ** * * * * **** * * ** consensus_6646#0 CTCGAACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGG 180 consensus_6646#1 ------TAGTCCGGAAATA--CGAAGAGGTTTATGTAAATATGACAATAATGA------- 104 *** **** * * ** ***** ** ** * ** * * *** consensus_6646#0 TATTCTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTC 240 consensus_6646#1 ---TTCTCTAATACGAGATGTATATCAGTTTC--CCCTTTCTCCAGACATCAAGAACTCT 159 * *** **** * * * * * *** * * * ** ** * consensus_6646#0 ATGAAGAAACACCATAGTTGCGTTGATGCCCCTCCAGCTC----ATTGGATATCAGCACC 296 consensus_6646#1 ACACTTAATGCCGGTGATGGTGTTAATATCACTGACGTTTCCCAATTGAAGTTTAGTCCT 219 * ** * * * * *** ** * ** * * **** * * ** * consensus_6646#0 G---GTGGCATTAACACCAAATCGTGACCTAGTTCATAGTTGTTCTTCTATAG-AGAACG 352 consensus_6646#1 ATATGTGAGTTTGAGAGAGATTTTCAAAT--GCTCAGATTCGCCGTCTTATAATAGTTCA 277 *** ** * * * * * * *** * * * * **** ** * consensus_6646#0 AAGTTTGTTTAT--TGGTT--AGCCAAGTACA---AGGTAGAGACTTTATCACT--TCAG 403 consensus_6646#1 CTGGTTGACAATAGTGGTTTTGATCTAGTGGACTCAAGTGATGCTTCCTTCGGTCATCGC 337 * *** ** ***** * *** * * ** * * ** * ** consensus_6646#0 CCCAATATGCTCCGAAATGTTATATAAAATCACTTGATTACGCCCCTTCAATTAGAACCT 463 consensus_6646#1 TCAAGTTTACTTGGTAATTCTG-ATGAAACGA------TGTATCCCAATATTTTGAAATT 390 * * * * ** * *** * ** *** * * *** * ** *** * consensus_6646#0 CATTTAATGAGATTGGTAACCCACCCAAACCGCCGAATTTTGAAGATAACCTA--ACTGC 521 consensus_6646#1 GAA--AGGAATACCAGAGATTTCCATAAGCCAC--ATTCCTGAAAGTGAACAATCACTCG 446 * * * * * * * ** ** * * * **** * * * * *** consensus_6646#0 TACAGTGAGTGAAGTGCGTATATGGATCAACAAAATAATAGACGACAGCTAGTCAGAATT 581 consensus_6646#1 AACGGTCTCGAAAAAGTCCAACTGGTTTTAGTGAAAACGATGAGATTGAAAAGCGGTATT 506 ** ** ** * * *** * * ** * * ** * * * * *** consensus_6646#0 CATCCCAGATATGAAGATCA-TAA-TATATATTTTTTG----GAACTGA----TGCATTA 631 consensus_6646#1 CTTCTGATACACAAAAACAAGTAACTCCAAATCTTCTGCTAAGGACTAAAAATTTCATGA 566 * ** * * * ** * * *** * * ** ** ** * *** * * *** * consensus_6646#0 AAAAAGACTATGCTTAATGGTTTCTTCTTTTAAGTAAATGAACTTAATATATCTTT 687 consensus_6646#1 AGAAACACCATAGTTG-CGTTGATGCCCCTCCAG---------------------- 599 * *** ** ** ** * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||