cluster # 6657

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Schistosoma mansoni
cluster # 6657 cluster # 6657 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6657#0 length = 994 sequences # 3

consensus_6657#1 length = 514 sequences # 1

consensusID : consensus_6657#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 994
fasta sequence

                              [AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC]

[+] EMBL CD079302             [AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAGTCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTACTTATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCANAAAGATCACTCTTCANATGAAATCAATAATGATAATACACANATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTCCATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATTTANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNAGACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANAGAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTTTTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTTTTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC]
[+] EMBL AI975495             [                                                                      AATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAATACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATCAACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAATATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGTAATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACAAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATATTCGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCACATTTAAAACACCATCATCTT                                                                                                                                                                                                                                                                 ]
[+] EMBL CD077863             [                                                                                                                                                                                                                                                                                                                                                                 tgGAAAATGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTACATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAATACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCAAATGA                                                                                                                                                                                                                                                                                                                                                                                                                                     ]




>consensus_6657#0
AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAG
TCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAAT
ACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATC
AACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAA
TATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGT
AATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAA
TGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTAC
ATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAAT
ACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATC
AGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGAT
AAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTC
CATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATT
TANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNA
GACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAATANA
GAGAGAAAGAGGTGCATGTGTGTGTGTGTGTACGTGTTTGACGAGAAAGGAGACTTNGTT
TTACCTATGAACTTATATCATATGACTACCCATTTCGGGATGGATAAGTTGTTTTTCTTT
TTCTAAACTGATTCAGCAGTTACTCCTAAAAAAC

consensusID : consensus_6657#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence

                              [CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA]

[-] EMBL CD073583             [CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAATATACATTTTCA]




>consensus_6657#1
CATCACCTTCTCAATATCAATCAGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCA
ATAATGATAATACCCCAATGATAAGAAATAATACGGATAATATTGAATATTCCCCTGAAA
ATTTTTGTCCAGTATTAAGTTCCATAAGAAAATTTGAAAAATATACAAATGAACATGGAG
AGAAAATAATACCAATCCCATTTAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTA
GTCAAAGCGGAATGTTACTGAGACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAA
TATGTATTTAACTAACAAATAGAGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTG
TTTGTACGAGAAAGGAGACTTTTGTTTTAACCTATGAGACTTATAATTCAATAATGACAT
ACCCATTTTCGGTGATTGATTAGTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAA
GCATGTTAACTTCCCTATAAAATATACATTTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6657#0      AAGAATCTATGCATTCATCATCAACAAGTTAACAACTTCTATGAATGGTAATAGTGGTAG 60
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      TCAAGAATCAAATGAACAACAAACTAATTCAAATAATGTAAAAACAAAAATTGTAGAAAT 120
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      ACCAAAAGATTTACAAAATTCTATACAACAACAAAATGAATTAATGAATAGAGCTAAATC 180
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      AACACAAAGTATTCATTCAACAATAAGTGCATATGATTCTTTATCTAAAACATTTTTAAA 240
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      TATGATCACAACTCGTCAAAATGATTTATGGATAACTATTATAGAACAAGAACAATCAGT 300
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      AATAGAGAATTTATTAAAAGGACAAATAGACCAATTAAAGCTGTTGATAACTAGTGAAAA 360
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      TGCTGCATTAAAACAATGTCAAATGGATTTTGATAGTCGTTTAGCTTATTCATCAGTTAC 420
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      ATTGGAAGCGAATCAAAAGTTTGTTGAACATGAATTCGTTGAAGAACAAGAACGTATAAT 480
consensus_6657#1      ------------------------------------------------------------
                                                                                  

consensus_6657#0      ACAATTTTATTTTCCTAATTCCAATACCAATAATATACCATCACCTTCTCAATATCAATC 540
consensus_6657#1      --------------------------------------CATCACCTTCTCAATATCAATC 22
                                                            **********************

consensus_6657#0      AGAAACCTTTCAAAAAGATCACTCTTCAAATGAAATCAATAATGATAATACACANATGAT 600
consensus_6657#1      AGAAACCTTTCAAAAAGATCACTCTTCCAATGAAATCAATAATGATAATACCCCAATGAT 82
                      *************************** *********************** *  *****

consensus_6657#0      AAGAAATAATACGGATAATATTGAATATTCCCCTGANNATTTTCGTCCAGTATTAAGTTC 660
consensus_6657#1      AAGAAATAATACGGATAATATTGAATATTCCCCTGAAAATTTTTGTCCAGTATTAAGTTC 142
                      ************************************  ***** ****************

consensus_6657#0      CATAAGAANATTTGAAAAATATACAAATGAACATGGAGAGAANATAATACCNATCACATT 720
consensus_6657#1      CATAAGAAAATTTGAAAAATATACAAATGAACATGGAGAGAAAATAATACCAATCCCATT 202
                      ******** ********************************* ******** *** ****

consensus_6657#0      TANNACACCATCATCTTCTAAATTCNAATTCAGTGGTAGTCAAAGCGGAATGTTACTGNA 780
consensus_6657#1      TAAAACCCCATCATTTTTTAAATTCAATTCCAGTGGTAGTCAAAGCGGAATGTTACTGAG 262
                      **  ** ******* ** ******* * * ****************************  

consensus_6657#0      GACAGACTGATTNGAACATGTTNGAATAGNTGNATGAATATGTATTTAACTAACAA-TAN 839
consensus_6657#1      ACAAGACTGATTTGAACATGTTTGAATAGTTGTATGAATATGTATTTAACTAACAAATAG 322
                         ********* ********* ****** ** *********************** ** 

consensus_6657#0      AGAGAGAAAGAGG-TGCATGTGTGTGTGTGTGTACGTGTTTG-ACGAGAAAGGAGACTTN 897
consensus_6657#1      AGAGAGAAAGAGGGTGCATGTGTGTGTGTGTGTACGTGTTTGTACGAGAAAGGAGACTTT 382
                      ************* **************************** **************** 

consensus_6657#0      -GTTTTA-CCTATGA-ACTTATA--TCAT--ATGAC-TACCCATTTCGGG--ATGGATAA 947
consensus_6657#1      TGTTTTAACCTATGAGACTTATAATTCAATAATGACATACCCATTTTCGGTGATTGATTA 442
                       ****** ******* *******  ***   ***** *********  **  ** *** *

consensus_6657#0      GTT-GTTTTTCTTTTTCT-------AAACTGATTC--AGCA-GTTA---CTCCTAAAAAA 993
consensus_6657#1      GTTTGTTTTTTTTCTTTTTTTTTAAAACTTGATTTCAAGCATGTTAACTTCCCTATAAAA 502
                      *** ****** ** ** *       **  *****   **** ****     **** ****

consensus_6657#0      C----------- 994
consensus_6657#1      TATACATTTTCA 514