cluster # 6660

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Schistosoma mansoni
cluster # 6660 cluster # 6660 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6660#0 length = 960 sequences # 3

consensus_6660#1 length = 534 sequences # 1

consensusID : consensus_6660#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 960
fasta sequence

                              [CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTATTTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTTNGTATATTAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAATTAAACATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACAAAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTATTCACCTTCCACTTAAAACATACTTCCCTCGCNGCCACTCTACACCCCCCGCTAGCTCACATACTCCTGGCGGTAATACTTCT]

[+] EMBL CD079363             [CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTCGCCGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATTTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTATTTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTTNGTATATTAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAATTAAACATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACAAAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTATTCACCTTCCACTTAAAACATACTTCCCTCGCNGCCACTCTACACCCCCCGCTAGCTCACATACTCCTGGCGGTAATACTTCT]
[+] EMBL AI977005             [                  TTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI067267             [                        CAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGATCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACGTGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCATTGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACACTTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTATGCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTAATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTGCTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAACACCCTCACACACAGGAGTAAATAAATGAGTGAAGCATTAACTAACTATATATTGAAAAAAAATTGACCATTTTATCAACAAATTTTCACATAT                                                                                                                                                                                                                                                                                                                                      ]




>consensus_6660#0
CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGA
TCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACG
TGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCAT
TGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACAC
TTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTAT
GCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTA
ATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTG
CTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGC
CAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAA
CACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAA
AAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTAT
TTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTT
NGTATATTAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAATTAAACA
TATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACAAA
ANAACCACCCATACTTCTTCTCCTTGCACCTACCCTATTCACCTTCCACTTAAAACATAC
TTCCCTCGCNGCCACTCTACACCCCCCGCTAGCTCACATACTCCTGGCGGTAATACTTCT

consensusID : consensus_6660#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 534
fasta sequence

                              [ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTATTTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTTGTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTAGGCATGAAATTAAACATATCAAGATTGTTATTTATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTAGTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATACATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAATAAAACTTTTCAG]

[-] EMBL CD073640             [ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAACACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTATTTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTTGTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCTAGGCATGAAATTAAACATATCAAGATTGTTATTTATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTAGTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATACATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAATAAAACTTTTCAG]




>consensus_6660#1
ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGCCAACTTATGAAAATACA
GCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAACACCCTCACACACAGAA
GTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAAAAATTGAACATTTTATC
AACAAATTTTCACATATCAATTCATATAATAGATCATAACTATTTCCTCTCCCAAATTGA
ACTAACCATATCATAATTAACTCAATAACATATATATACATTTGTAATATTAAAAAAATT
AATCGCTCACCGTACGTACTCTTTTCTAGGCATGAAATTAAACATATCAAGATTGTTATT
TATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTAGTAGTAGTACTACTACTAC
TACTACTGTCAACTAACAACTGTAACATTAAACTTATATACATATCTACACTGGGCTTCC
ATTTATACATATCGTATAACTGGTAATAATAATAATGATAATAAAACTTTTCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6660#0      CCTAATTTAGGATGTCGCTTAACACAGCTTACGCTAGTACAATACCAGCAGTTTTCAAGA 60
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      TCGTTGAGATTATTCTCAATATTATACTAATCATTCTTGTTGCTGTTTCACCTAATTACG 120
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      TGATTCCTGGTCCTGGAGGATGGTTATTCTTCGTTGCAATCTTGACTACATTGATTTCAT 180
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      TGTTTTTCTATTGTATTCACCTAACGAATGCGATCTACAAATTTTCGGGGCCTATGACAC 240
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      TTATTGAATTTATATGCATCGCAATATGTTCAGGTTTTCATTTAATCGCTATGATTGTAT 300
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      GCGCGTGTACAGTATCAGGTTATGGGACGGCAATTGCTGCAGCTGTATTTTTCGCGATTA 360
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      ATTTTCTTCTTTATGGTGTCGATGCATTTTTCCTATTTGCATTATACCGAGTAAATGGTG 420
consensus_6660#1      ------------------------------------------------------------
                                                                                  

consensus_6660#0      CTTATTTACATGAACATACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGC 480
consensus_6660#1      -----------------ACAAATCCAAATCCACAAATTGCTCCAAAAACAAATCAAATGC 43
                                       *******************************************

consensus_6660#0      CAACTTATGAAAATACAGCTTATAATCCACAATAAATTCAAGACTCAACAATATGAAAAA 540
consensus_6660#1      CAACTTATGAAAATACAGCTTATAATCCGCAATAAATTCAAGACTCACCAATATGAAAAA 103
                      **************************** ****************** ************

consensus_6660#0      CACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAA 600
consensus_6660#1      CACCCTCACACACAGAAGTAAATAAATGAGTGAAGCAATAACTAACTATATATTGAAAAA 163
                      ************************************************************

consensus_6660#0      AAATTGAACATTNTATCAACANATTTTCACATATCAATTCATATAATAGATCATAACTAT 660
consensus_6660#1      AAATTGAACATTTTATCAACAAATTTTCACATATCAATTCATATAATAGATCATAACTAT 223
                      ************ ******** **************************************

consensus_6660#0      TTTCTCTCCCAAATTGAACTAACCATATCATAATTAACCTCAATACCTATATATACATTT 720
consensus_6660#1      TTCCTCTCCCAAATTGAACTAACCATATCATAATTAACTCAATAACATATATATACATTT 283
                      ** ***********************************   *  ** *************

consensus_6660#0      NGTATATTAAAAAA-TTAATCGCTCACCGTACGTACTCTTTTCTTAGGCATGAA-TTAAA 778
consensus_6660#1      GTAATATTAAAAAAATTAATCGCTCACCGTACGTACTCTTTTCT-AGGCATGAAATTAAA 342
                         *********** ***************************** ********* *****

consensus_6660#0      CATATCAAGAATGGTATTTTATACTACTCCATTTTGCTATGTTGAGTAGATGCAAAAACA 838
consensus_6660#1      CATATCAAGATTGTTATTT-ATACTACTCAATTTTGCTATGTTGAGTAGTTGTAGTAGTA 401
                      ********** ** ***** ********* ******************* ** *  *  *

consensus_6660#0      AAANAACCACCCATACTTCTTCTCCTTGCACCTACCCTAT-TCACCTTCCACTTAAA-AC 896
consensus_6660#1      GTAGTAGTACTACTACTACTACTACTGTCAACTAACAACTGTAACATTAAACTTATATAC 461
                        *  *  **   **** ** ** **  ** *** *   * * ** **  ***** * **

consensus_6660#0      ATACTTCC-CTCGCNGCCACTCTACACCCCCCGC-TAGCTCACA----TACTCCTGGCGG 950
consensus_6660#1      ATATCTACACTGGGCTTCCATTTATACATATCGTATAACTGGTAATAATAATAATGATAA 521
                      ***  * * ** *    *  * ** **    **  ** **   *    ** *  **    

consensus_6660#0      TAATACTTCT--- 960
consensus_6660#1      TAAAACTTTTCAG 534
                      *** **** *