These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1277 fasta sequence [CAANAATTTGGCACGAGGGATTCTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAAGCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCATCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGCTTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAATAACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACCCGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGCGGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAATGACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTTAAGAAGGTTATTTCGTGTCTTTCAACGTGTATATTTCCTGATCGTACAACTTATCCAATCGACGAAACTATGGTACACAATGGACCTCCACATGATTCTAATTACGGATATTCTTATGCTAAACGCATGATTGATGTAATGAATAGAGGGTATAGCGAGACTTTCGATGTTCTTTATACGTCTATTATACCTACCAATGTATTTGGTCCATTTGATAACTTCGATATTAATCAAGGACATGTTCTTCCTGGTCTTATCCATAAAGCATACTTGGCTAAAAAGAATGGCGAACCTTTAACTGTTTGGGGTTCTGGTAAGCCATTGCGTCAGTTTATTTATTCTGTTGATTTGGGTCATCTCATCATATGGACTTTACGGGAGTACAACGATTCTTCTCCAATTATACTTTCTGTACCCGAAAGTGATGAAATTTCGATCCGTCAAGCTGCTGAAGTAGTAGCCAAGGCAATGGATTGTCCTGAACTCGTTTTTGACACAACTAAAGCGGATGGTCAGTTTAAGAAAACTGCTAATGCATCCAAACTTCGCCAACTTTATCCTGATTTTAAATTCACTCCTTTTGAACAGGCTATTGAATATACTTGCAAATGGTTCCGTGAAAATTATGACACTATTCGGTGCTAGTTGTGTCTAGAATTATCTGTGGATAATCACTAATATGATTAGTTATTTTCAATGTATTTTTTTACTGTGTCACTATAATCTGGTTAAATATGTAAAAAATAGTTTGATTTTGATTTTAATTTTTCTAATAACTCAATCCGGATAATATGTTCTAAGTATTCAGTTAAAATAAATAA] [+] EMBL CD079469 [CAANAATTTGGCACGAGGGATTCTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAAGCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCATCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGCTTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAATAACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACCCGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGCGGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAATGACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTTAAGAAGGTTATTTCGTGTCTTTCAACGTGTATATTTCCTGATCGTACAACTTATCCAATCGACGAAACTATGGTACACAATGGACCTCCACATGATTCTAATTACGGATATTCTTATGCTAAACGCATGATTGATGTAATGAATAGAGGGTATAGCGAGACTTTCGATGTTCTTTATACGTCTATTATACCTACCAATGTATTTGGTCCATTTGATAACTTCGATATTAATCAAGGACATGTTCTTCCTGGTCTTATCCATAAAGCATACTTGG ] [-] EMBL CD073740 [ TCTAATTACGGATATTCTTATGCTAAACGCATGATTGATGTAATGAATAGAGGGTATAGCGAGACTTTCGATGTTCTTTATACGTCTATTATACCTACCAATGTATTTGGTCCATTTGATAACTTCGATATTAATCAAGGACATGTTCTTCCTGGTCTTATCCATAAAGCATACTTGGCTAAAAAGAATGGCGAACCTTTAACTGTTTGGGGTTCTGGTAAGCCATTGCGTCAGTTTATTTATTCTGTTGATTTGGGTCATCTCATCATATGGACTTTACGGGAGTACAACGATTCTTCTCCAATTATACTTTCTGTACCCGAAAGTGATGAAATTTCGATCCGTCAAGCTGCTGAAGTAGTAGCCAAGGCAATGGATTGTCCTGAACTCGTTTTTGACACAACTAAAGCGGATGGTCAGTTTAAGAAAACTGCTAATGCATCCAAACTTCGCCAACTTTATCCTGATTTTAAATTCACTCCTTTTGAACAGGCTATTGAATATACTTGCAAATGGTTCCGTGAAAATTATGACACTATTCGGTGCTAGTTGTGTCTAGAATTATCTGTGGATAATCACTAATATGATTAGTTATTTTCAATGTATTTTTTTACTGTGTCACTATAATCTGGTTAAATATGTAAAAAATAGT ] [+] EMBL SMAA28843 [ TGCAAATGGTTCCGTGAAAATTATGACACTATTCGGTGCTAGTTGTGTCTAGAATTATCTGTGGATAATCACTAATATGATTAGTTATTTTCAATGTATTTTTTTACTGTTTCACTATAATCTGGTTAGCTATGTAAAAAATAGTTTGATTTTGATTTTAATTTTTCTAATAACTCAATCCGGATAATATGTTCTAAGTATTCAGTTAAAATAAATAA] consensusID : consensus_6666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 455 fasta sequence [CTCGTGGAGGCTATGGTTTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAAGCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCATCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGCTTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAATAACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACCCGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGCGGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAATGACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTCAAGA] [+] EMBL CD118368 [CTCGTGGAGGCTATGGTTTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAAGCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCATCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGCTTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAATAACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACCCGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGCGGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAATGACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6666#0 CAANAATTTGGCACGAGGGATTCTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAA 60 consensus_6666#1 ---CTCGTGGAGGCTATGG--TTTTCTAGGGCCTATATATCCAGCAGAATACTTACCAAA 55 * * * * ** * ************************************* consensus_6666#0 GCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCA 120 consensus_6666#1 GCTGACCTATCCAAGTTCTAGATACTATTAAATTGCCGGCTTACAACACATCTGGTCTCA 115 ************************************************************ consensus_6666#0 TCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGC 180 consensus_6666#1 TCTATAACACTATAAACTTAAAATATGGAAACCACTGTATTAGTTACAGGGGGTTCTGGC 175 ************************************************************ consensus_6666#0 TTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAAT 240 consensus_6666#1 TTAGTGGGAAATGGTATCCGACTAGCTCTAGAGAACATTAACGGTCCCCTCAAACGAAAT 235 ************************************************************ consensus_6666#0 AACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACC 300 consensus_6666#1 AACGAAAAGTGGATATTTTTGTCTTCTAAAGACGTTAATCTGACGGATAGTAATGCTACC 295 ************************************************************ consensus_6666#0 CGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGC 360 consensus_6666#1 CGGGCATATTTTGAGCGCATACGCCCAACCTATGTAATCCACTTAGCTGCCAAAGTCGGC 355 ************************************************************ consensus_6666#0 GGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAAT 420 consensus_6666#1 GGTTTGTTTGCCAATATGTCTGACAATCTTGAATTCTTTCGCCAAAACATGCATATTAAT 415 ************************************************************ consensus_6666#0 GACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTTAAGAAGGTTATTTCGTGTCTTTCA 480 consensus_6666#1 GACAATGTATTGTCAAGCAGTCATGCAGTTGGTGTCAAGA-------------------- 455 *********************************** **** consensus_6666#0 ACGTGTATATTTCCTGATCGTACAACTTATCCAATCGACGAAACTATGGTACACAATGGA 540 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 CCTCCACATGATTCTAATTACGGATATTCTTATGCTAAACGCATGATTGATGTAATGAAT 600 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 AGAGGGTATAGCGAGACTTTCGATGTTCTTTATACGTCTATTATACCTACCAATGTATTT 660 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 GGTCCATTTGATAACTTCGATATTAATCAAGGACATGTTCTTCCTGGTCTTATCCATAAA 720 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 GCATACTTGGCTAAAAAGAATGGCGAACCTTTAACTGTTTGGGGTTCTGGTAAGCCATTG 780 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 CGTCAGTTTATTTATTCTGTTGATTTGGGTCATCTCATCATATGGACTTTACGGGAGTAC 840 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 AACGATTCTTCTCCAATTATACTTTCTGTACCCGAAAGTGATGAAATTTCGATCCGTCAA 900 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 GCTGCTGAAGTAGTAGCCAAGGCAATGGATTGTCCTGAACTCGTTTTTGACACAACTAAA 960 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 GCGGATGGTCAGTTTAAGAAAACTGCTAATGCATCCAAACTTCGCCAACTTTATCCTGAT 1020 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 TTTAAATTCACTCCTTTTGAACAGGCTATTGAATATACTTGCAAATGGTTCCGTGAAAAT 1080 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 TATGACACTATTCGGTGCTAGTTGTGTCTAGAATTATCTGTGGATAATCACTAATATGAT 1140 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 TAGTTATTTTCAATGTATTTTTTTACTGTGTCACTATAATCTGGTTAAATATGTAAAAAA 1200 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 TAGTTTGATTTTGATTTTAATTTTTCTAATAACTCAATCCGGATAATATGTTCTAAGTAT 1260 consensus_6666#1 ------------------------------------------------------------ consensus_6666#0 TCAGTTAAAATAAATAA 1277 consensus_6666#1 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||