These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1164 fasta sequence [CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT-TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT-TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT] [+] EMBL CD079595 [CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTNTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTTNTAAACCAGT ACCATATAATGTTAAAC ] [-] EMBL CD073857 [ AAATAAATAGGGTAACA TTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT] [-] EMBL CD073858 [ aGTTAGTTGGTGTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTAGTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACTAATATCTTTGTAGCATTTTAAGTCTCGTATTGTCATACATACGCATTTTTGAAGTCTATATATCAGTTCTCTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTGTGTTAAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTAAAATATTGTATTCTTTGACTCCTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTAATTTCCCTCAAAATCATCATTTATTAATAACTAAAACATTTCT ] consensusID : consensus_6669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT] [-] EMBL SMAA69934 [ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6669#0 CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGT 60 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 ACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAAT 120 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 GTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATC 180 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 ACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTC 240 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 TGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATT 300 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 CTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATC 360 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 TCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAAT 420 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 CAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAA 480 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 AAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGT 540 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 TTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTA 600 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 GTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATG 660 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 ATATTTATATGCTACTTATAATCAAGCATGTGATATGTTTTAACCAGTAACCATATAATG 720 consensus_6669#1 ------------------------------------------------------------ consensus_6669#0 TTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTT 780 consensus_6669#1 ---------------------------------------------------ACCCGGTTT 9 ** ** *** consensus_6669#0 TGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACT 840 consensus_6669#1 -GAGGCC---CTCACAGGAC-CCTGCCGTATATGAAAGTTTGT-GCC-CCCTTCCTTAC- 61 ** * * ** *** * * ** ***************** *** * *** **** consensus_6669#0 CTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAA 900 consensus_6669#1 CTGTTGAGAA-CATCAATCCTTATTGAATGGGCGGGGGTAAATT-ACTTTGGGGG-ATAA 118 ********** ***** ** * ******** * * ** *** ****** ** **** consensus_6669#0 TCTATAATATTTTCTGATCGGAATTTCATTATTATTTGTATTCTTTGACTACTATTATGC 960 consensus_6669#1 ACTATAATAATTTCTGAGCGGAAGTCA--TAATAAATGTAATCTT-GACTACCAATATGC 175 ******** ******* ***** * ** ** **** **** ****** * ***** consensus_6669#0 TGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCAT 1020 consensus_6669#1 TGTATCCATGT-CTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCAT 234 *********** **************** ******************************* consensus_6669#0 TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 1080 consensus_6669#1 TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 294 ************************************************************ consensus_6669#0 GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 1140 consensus_6669#1 GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 354 ************************************************************ consensus_6669#0 GTAAACAAAAATGAAATAAAACTT 1164 consensus_6669#1 GTAAACAAAAATGAAATAAAACT- 377 *********************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||