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Schistosoma mansoni
cluster # 6669 cluster # 6669       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6669#0 length = 1164 sequences # 3  
consensus_6669#1 length = 377 sequences # 1  

consensusID : consensus_6669#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1164
fasta sequence
                              [CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT-TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT-TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT]

[+] EMBL CD079595             [CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGTACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAATGTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATCACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTCTGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATTCTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATCTCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAATCAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAAAAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTNTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTTNTAAACCAGT ACCATATAATGTTAAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD073857             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AAATAAATAGGGTAACA TTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGTTTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTAGTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTTTGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTCTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTATTAT TTGTATTCTTTGACTACTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACTT]
[-] EMBL CD073858             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   aGTTAGTTGGTGTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTAGTATGATATTTATATGCTACTTATAATCAAGCATGTGATATGTT TTAACCAGTAACCATATAATGTTAAACCAACTAATATCTTTGTAGCATTTTAAGTCTCGTATTGTCATACATACGCATTTTTGAAGTCTATATATCAGTTCTCTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACTGTGTTAAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAATCTATAATATTTTCTGATCGGAATTTCATTAAAATATTGTATTCTTTGACTCCTATTATGCTGTATCCATGTTCTATGCTACAAATTACTTCATACATTTAATTTCCCTCAAAATCATCATTTATTAATAACTAAAACATTTCT                                                                                                                         ]


>consensus_6669#0 CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGT ACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAAT GTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATC ACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTC TGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATT CTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATC TCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAAT CAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAA AAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGT TTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTA GTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATG ATATTTATATGCTACTTATAATCAAGCATGTGATATGTTTTAACCAGTAACCATATAATG TTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTT TGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACT CTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAA TCTATAATATTTTCTGATCGGAATTTCATTATTATTTGTATTCTTTGACTACTATTATGC TGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCAT TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA GTAAACAAAAATGAAATAAAACTT



consensusID : consensus_6669#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 377
fasta sequence
                              [ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT]

[-] EMBL SMAA69934            [ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTACCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAACTATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTATCCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAACAAAAATGAAATAAAACT]


>consensus_6669#1 ACCCGGTTTGAGGCCCTCACAGGACCCTGCCGTATATGAAAGTTTGTGCCCCCTTCCTTA CCTGTTGAGAACATCAATCCTTATTGAATGGGCGGGGGTAAATTACTTTGGGGGATAAAC TATAATAATTTCTGAGCGGAAGTCATAATAAATGTAATCTTGACTACCAATATGCTGTAT CCATGTCTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCATTTATTA ATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGTGATTAC CTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCAGTAAAC AAAAATGAAATAAAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6669#0      CCAGCCAANAATTTGGCACGAGGATCACTTCCAGCTAAACGAAAATCAGACATTTCAGGT 60
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      ACTTTTTGTTTAGTGTTAAGTACGTCTTTGTGTTTGGTGCATGCACTCCAATTTTGAAAT 120
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      GTGACTGATTATTGCTACTGCTGCCACTTTCTGCTACTTCTGGTACTGTTTGTGTATATC 180
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      ACTTTACAAGTATGTGCTTATGTATGTCTACTTATGTTTTTGTACATAACATTTACATTC 240
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      TGTTTTTGATGATGATAATGATGGTACGGATTTTAGTTTCTTCCGTTATCTCTTAAAATT 300
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      CTAGTAATTTGCATTTAAAAACATGCACATGCCTGGTGGGATAAAATTAACTTTCCTATC 360
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      TCTTATTCTCTTCATATTCTAACAACTACCTATTTCTATTCTTATTTCTGCTGAAATAAT 420
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      CAAGTACGCTGAATGCCTAAACATTTACTAATGATGCCTTGTTTTATATCCTTTCTGCAA 480
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      AAAATAAATAGGGTAACATTTTCTCCAAGTAAGGCAAAGTTGTGTATACGTCTATTTTGT 540
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      TTTGATTGAAATGAGCTGAGTGAAATATAGGTTTCTTCTGCTCCATTTATTCGTTCGTTA 600
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      GTTGGTTTGTTGATCTGTTTGCTTTTGTCAAACTTAACTAGTAATTTTGGTAGTATTATG 660
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      ATATTTATATGCTACTTATAATCAAGCATGTGATATGTTTTAACCAGTAACCATATAATG 720
consensus_6669#1      ------------------------------------------------------------
                                                                                  

consensus_6669#0      TTAAACCAACAAATATCTTTGTAGCATTTTTAGTCTCGTATTGTCATACATACGCGTTTT 780
consensus_6669#1      ---------------------------------------------------ACCCGGTTT 9
                                                                         ** ** ***

consensus_6669#0      TGAAGTCTATCTATCAGTTCACTTGACGTATATGAAAGTTTGTTGCCACTTTTCTTTACT 840
consensus_6669#1      -GAGGCC---CTCACAGGAC-CCTGCCGTATATGAAAGTTTGT-GCC-CCCTTCCTTAC- 61
                       ** * *   **  ***  * * ** ***************** *** *  *** **** 

consensus_6669#0      CTGTTGAGAAACATCATTCTTATTTGAATGGTCTGTTTTATATTTACTTTGAAGGTATAA 900
consensus_6669#1      CTGTTGAGAA-CATCAATCCTTATTGAATGGGCGGGGGTAAATT-ACTTTGGGGG-ATAA 118
                      ********** ***** ** *  ******** * *   ** *** ******  ** ****

consensus_6669#0      TCTATAATATTTTCTGATCGGAATTTCATTATTATTTGTATTCTTTGACTACTATTATGC 960
consensus_6669#1      ACTATAATAATTTCTGAGCGGAAGTCA--TAATAAATGTAATCTT-GACTACCAATATGC 175
                       ******** ******* ***** *    ** **  **** **** ****** * *****

consensus_6669#0      TGTATCCATGTTCTATGCTACAAATTACTTCATACATTTTATTTCCCTCAAAATCATCAT 1020
consensus_6669#1      TGTATCCATGT-CTATGCTACAAATTACNTCATACATTTTATTTCCCTCAAAATCATCAT 234
                      *********** **************** *******************************

consensus_6669#0      TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 1080
consensus_6669#1      TTATTAATGACTGAAACATTTCTTTATGACTGCAATTTTTTTACTTTTGAAATGAGTTGT 294
                      ************************************************************

consensus_6669#0      GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 1140
consensus_6669#1      GATTACCTCATTGTCCAAGTCTTTTCCTTTTGGTTTCTACATCTATTTATCTTCATTTCA 354
                      ************************************************************

consensus_6669#0      GTAAACAAAAATGAAATAAAACTT 1164
consensus_6669#1      GTAAACAAAAATGAAATAAAACT- 377
                      *********************** 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)