These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 866 fasta sequence [CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGGAC-ATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTATTNCTGA-TATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNT-ATTCGTGTA-CCTGTGATGTA-TTTTATGAAT-AAATCACAT] [+] EMBL CD080214 [CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGGAC ATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTATTNCTGA TATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNT ATTCGTGTA CCTGTGATGTA TTTTATGAAT AAATCACAT] [-] EMBL CD073869 [ AAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTAT GGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATT CTGATTATCTTTTATGAATTACATCATGTTAAGAAGGAATAGACTATTTAATTCGTGTACCCTGTGATGTATTTTTATGAATAAAATCACAT] consensusID : consensus_6671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence [TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCTCATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT] [+] EMBL CD079607 [TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCTCATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATTCAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATTAATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAGGATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTTATTGTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT] consensusID : consensus_6671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [GCGGCACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATTCTG] [+] EMBL CD083649 [GCGGCACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTATAACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATACGTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTGGAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACAAATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGATTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACATCAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAATGCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGAAATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTATTCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6671#0 ------------------------------------------------------------ consensus_6671#2 ------------------------------------------------------------ consensus_6671#1 TGGCATGAGGATCGATGGAACTGTGCTTATTTGTATAATAAACATTGAAACAATAAATCT 60 consensus_6671#0 ---CTCGCAGGCCANAATTCGGCACGAGGTCCAAATTGAAGTTATTCAACAGTTAATTTG 57 consensus_6671#2 ------------------------------------------------------------ consensus_6671#1 CATAATTTATTAATATCAAGAAGATACATCATTTTTCTTTATTTCCAAATTGAAGTTATT 120 consensus_6671#0 CAGTGATATTATTTTCTTTTTTCAGCACAACAGGTTATTTTCAAAGATAAAATTTAAATT 117 consensus_6671#2 ------------------------------------------------------------ consensus_6671#1 CAACAGTTAATTTGCAGTGATATTACACAACAGGTTATTTTCAAAGATAAAATTTAAATT 180 consensus_6671#0 AATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAG 177 consensus_6671#2 ------------------------------------------------------------ consensus_6671#1 AATACATGAGTGAACTCAACTTAGAATTGAAAAGACCAGTTGTTATATGTGGTCCATCAG 240 consensus_6671#0 GATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTT 237 consensus_6671#2 -------------------------------------------------------GCGGC 5 consensus_6671#1 GATGTGGAAAAAGCACATGTATAAGAATGCTTATCAACAAATATCCAAATTCTTTTCGTT 300 ** consensus_6671#0 ATT-GTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTAT 296 consensus_6671#2 ACGAGGGTATCCCACACCACTCGACCAAGACTTCCAGATGAAATTCATACAAGAGATTAT 65 consensus_6671#1 ATT-GTGTATCCCACACCACTCGACCAAGACGTCCAGATGAAATTCATACAAGAGATTAT 359 * * ************************* **************************** consensus_6671#0 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 356 consensus_6671#2 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 125 consensus_6671#1 AACTTTGTGTCAAAAGAAGAATTTGATGAAGCAATAAGTAAAGACGAATTCATTGAATAC 419 ************************************************************ consensus_6671#0 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 416 consensus_6671#2 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 185 consensus_6671#1 GTAATGTTTTCTGGACATTATTATGGGACAAGTAAATCTGAATTGAAAAAAGCTGAATTG 479 ************************************************************ consensus_6671#0 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 476 consensus_6671#2 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 245 consensus_6671#1 GAGAAACGTGTCTGTTTAATGGATGTCGATATACAAGGTGTTGAAAAGCTACAGAAAACA 539 ************************************************************ consensus_6671#0 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 536 consensus_6671#2 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 305 consensus_6671#1 AATATTAATCCAATTTGTATTTTTATACGTCCTAGAACTTTTGCTATACTTGAAAAACGA 599 ************************************************************ consensus_6671#0 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACAT 596 consensus_6671#2 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTTGCACAT 365 consensus_6671#1 TTAAGATCTCGTTCTACAGAAAGTGAAGATAGAATTCTTCAACGTCTTGCAGTT------ 653 ****************************************************** consensus_6671#0 CAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAAT 656 consensus_6671#2 CAGGAAATGCAGTACGGTATATCTGAAGGGAAATTTGATGCTGTTATTGTTAATGATAAT 425 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 GCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGA 716 consensus_6671#2 GCTGATAAAATGGTACAAGAGGTTATTGATGTAATAAAACAAAAATTGAGCATTTAATGA 485 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 AATAAATATTATGGGACATATATCTCACAATTTATCAAACTCTATATTGAAGAAGATTTA 776 consensus_6671#2 AATAAATATTATGGACAATATATCTCACAATTTATCAAACTCTATATTGAAGAGAATTTA 545 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 TTNCTGATATCTTTTATGAATTACATCATNGTCAGAANGGATAGACTATNTATTCGTGTA 836 consensus_6671#2 TTCTG------------------------------------------------------- 550 consensus_6671#1 ------------------------------------------------------------ consensus_6671#0 CCTGTGATGTATTTTATGAATAAATCACAT 866 consensus_6671#2 ------------------------------ consensus_6671#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||