These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGNAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATGGTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTTCACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTTGGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCAGGATCGACCAAGC] [+] EMBL AW016975 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCGNAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATGGTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTTCACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTTGGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCAGGATCGACCAAGC] consensusID : consensus_6672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 254 fasta sequence [ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACCCCTCGTGCCGAATTC] [+] EMBL CD079673 [ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAA ] [-] EMBL CD080494 [ TTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGATAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGATTCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAAAAAACCCCTCGTGCCGAATTC] [-] EMBL CD073933 [ TTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACTCTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTAATAAGGTCACTGAAGCAAAATTTTTAATTAAAAGTAAAAAAAAncatc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6672#0 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTCG 60 consensus_6672#1 ------------------------------------------------------------ consensus_6672#0 NAATGCAATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACT 120 consensus_6672#1 -------ATTGATATATTTCTTCATTCTGAATAAATCAAAACAAGTTACTGGATTCCACT 53 ***************************************************** consensus_6672#0 CTACATTTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGA 180 consensus_6672#1 CTACATCTCGACCACCGTTAGCAGTTTCATTTACTGCTACTGTCCCACTAGTGAGCCTGA 113 ****** ***************************************************** consensus_6672#0 TAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGAT 240 consensus_6672#1 TAAGGTCACTGAAGCAAAATTTTTAATTAAAAATCATAAAAATAACACAAGCAAAAAGAT 173 ************************************************************ consensus_6672#0 TCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAA 300 consensus_6672#1 TCTTAAGCTAATAGTTAAATACATAACTTTATGTTTCAATGAATGGAACTTATAATATAA 233 ************************************************************ consensus_6672#0 AAAACTATGGGTAAAGAAGTTATTGGATGAACAAAGAGAACAAAATGAGTCAAAACTATG 360 consensus_6672#1 AAAACCCCTCGTGCCGAATTC--------------------------------------- 254 ***** ** *** * consensus_6672#0 GTACAAAACCTGGAATCTCATAAATAAATTGTACAAAAACTATCTCCTTAGCTCGAAGTT 420 consensus_6672#1 ------------------------------------------------------------ consensus_6672#0 CACACATAAGATGAGTTTATTGTGTTTAAAGTATCAATACTTGAGGGATTAATAATAGTT 480 consensus_6672#1 ------------------------------------------------------------ consensus_6672#0 GGCAACTCAACGATGACACTGGATTTATTTGGAATGTTATCCGGCTTTTGTGTGTCATCA 540 consensus_6672#1 ------------------------------------------------------------ consensus_6672#0 GGATCGACCAAGC 553 consensus_6672#1 ------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||