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Schistosoma mansoni
cluster # 6675 cluster # 6675       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6675#0 length = 1035 sequences # 3  
consensus_6675#1 length = 713 sequences # 1  

consensusID : consensus_6675#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1035
fasta sequence
                              [ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA]

[+] EMBL CD079716             [ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGG                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD073974             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACCCCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTTTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCCCCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA]
[+] EMBL AI820486             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTCAGTGTACGAAAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCCTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAAT AAAATTATTTTc]


>consensus_6675#0 ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTT AAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTA CTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATT TTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAA GGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCT AAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCT TCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCT TTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGC GGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAA TGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCA TCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGA ACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATG GCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGT TCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTC AGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGC TGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCA GAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAA ATAAAAATTATTTTA



consensusID : consensus_6675#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence
                              [TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA]

[+] EMBL CD079385             [TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA]


>consensus_6675#1 TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT TTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA TGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6675#0      -ANAATTCGGCACGAGG--ACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 57
consensus_6675#1      TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 60
                         *   *  *  ****  ** **************************************

consensus_6675#0      TTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 117
consensus_6675#1      TTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 120
                      ************ ***********************************************

consensus_6675#0      TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 177
consensus_6675#1      TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 180
                      ************************************************************

consensus_6675#0      ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 237
consensus_6675#1      ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 240
                      ************************************************************

consensus_6675#0      CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 297
consensus_6675#1      CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 300
                      ************************************************************

consensus_6675#0      GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 357
consensus_6675#1      GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 360
                      ************************************************************

consensus_6675#0      GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 417
consensus_6675#1      GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 420
                      ************************************************************

consensus_6675#0      TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 477
consensus_6675#1      TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 480
                      ************************************************************

consensus_6675#0      TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 537
consensus_6675#1      TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 540
                      ************************************************************

consensus_6675#0      GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 597
consensus_6675#1      GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 600
                      ************************************************************

consensus_6675#0      TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 657
consensus_6675#1      TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 660
                      ************************************************************

consensus_6675#0      TGAACAATTGAAGACTATGG-CTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATC 716
consensus_6675#1      TGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA------- 713
                      ******************** ********************************       

consensus_6675#0      CATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATT 776
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAAT 836
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      GTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTC 896
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      AAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTAT 956
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      TTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAA 1016
consensus_6675#1      ------------------------------------------------------------
                                                                                  

consensus_6675#0      AGAAATAAAAATTATTTTA 1035
consensus_6675#1      -------------------
                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)