These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1035 fasta sequence [ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA] [+] EMBL CD079716 [ANAATTCGGCACGAGGACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGG ] [-] EMBL CD073974 [ TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACCCCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTTTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCCCCGGATGAACAATTGAAGACTATGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAATAAAAATTATTTTA] [+] EMBL AI820486 [ GTCAGTGTACGAAAAAACCCTCGCTCAATACCATCCATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATTTAGTTCATCATATCGTCCAATCTCAACCTCCTGAGAGTGGTTTGCTTACAAATGAACAATGTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTCAAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTATTTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAAAGAAAT AAAATTATTTTc] consensusID : consensus_6675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 713 fasta sequence [TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA] [+] EMBL CD079385 [TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTTTTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCATTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGTATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGACAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTCGCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCTGCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAATCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATATGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCAGAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCTTCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGATGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6675#0 -ANAATTCGGCACGAGG--ACCTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 57 consensus_6675#1 TTTACGACAACTAGAGGCCACTTGACCTCTAAAGGTCGTGCCACTAAAGAATATATAGTT 60 * * * **** ** ************************************** consensus_6675#0 TTTAAATTTCATCATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 117 consensus_6675#1 TTTAAATTTCATAATATATATTCTGAGCTATTATACGTCTACAACTGTTGTATTTTGGCA 120 ************ *********************************************** consensus_6675#0 TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 177 consensus_6675#1 TTACTGTAACATCCATCTACCTCACTGAAAAGTCTGTAAAATAGGTACCTTGGAGAAGGT 180 ************************************************************ consensus_6675#0 ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 237 consensus_6675#1 ATTTTCTCATAATCAGATAAGCGTTCAACCTAAATAAAAAGCAGTTTTGACACTGGTAGA 240 ************************************************************ consensus_6675#0 CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 297 consensus_6675#1 CAAGGGCATTAATGTATACACTACCTTCAATTAAATAATGGGTCATTCGGATAATGCTTC 300 ************************************************************ consensus_6675#0 GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 357 consensus_6675#1 GCTAAATTTATATAACGTATACAATAAATTCAAAGCTTGTGTAAACGGCGATGACGTTCT 360 ************************************************************ consensus_6675#0 GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 417 consensus_6675#1 GCTTCCTGAGTATTGTGAAGCATATACGGAGGTTTCTAAACTTCTCGTATACTTTGGAAA 420 ************************************************************ consensus_6675#0 TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 477 consensus_6675#1 TCTTTTTTATTTCGTGACCAGTGATGTCAGTCACAAAGTTTCGGAACTCCGTGACTTATA 480 ************************************************************ consensus_6675#0 TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 537 consensus_6675#1 TGCGGCAGATAAAATTAATTATAAATCCGTCGAACAAATGGTTCTGTATGAGGAAAAGCA 540 ************************************************************ consensus_6675#0 GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 597 consensus_6675#1 GAATGAACACCTTCCAGTTAAAAAGCGGAAATGCGTCGGGTCCCGAACACTTCTTCGTCT 600 ************************************************************ consensus_6675#0 TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 657 consensus_6675#1 TCATCGGGCTCTTCTCTTTGTCATTGATTTAATGCAGGAAATTTGCAGAGCACCACCGGA 660 ************************************************************ consensus_6675#0 TGAACAATTGAAGACTATGG-CTCGGTCAGTGTACGACAAAACCCTCGCTCAATACCATC 716 consensus_6675#1 TGAACAATTGAAGACTATGGGCTCGGTCAGTGTACGACAAAACCCTCGCTCAA------- 713 ******************** ******************************** consensus_6675#0 CATGGCCTATTAGAAAGGCTGTAGGAGTTGCTGTTTATGCTCTCCCTACACGGGAACATT 776 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TAGTTCATCATATCGTCCAATCTCAACCTCGTGAGAGTGGTTTGCTTACAAATGAACAAT 836 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 GTTCAGAGTTCCTCACTTCACATACTTTACCTGTAATGCGCAAGGTATATAACTGTATTC 896 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 AAGCTGTTTTCGAGAAACATGATATGCTAAATTTGCCATAGTTATCTTGATGTATACTAT 956 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 TTCAGAACTTAATATTTTTGTACTTCAAAAACAATAGTTATAAAGATAAGTATTGCTTAA 1016 consensus_6675#1 ------------------------------------------------------------ consensus_6675#0 AGAAATAAAAATTATTTTA 1035 consensus_6675#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||