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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence
[AAATTCTTTTAAGATGTCACAAAAAACATAATACTACATGTAATACAAAGTAGTCGTCAGTATACCTTCGACGCGGCCTCGCGAGGTGTAGGTATGCAATTTCAATGTAGTTTATAATGGATTATATCCACTGATGAAAATGTATTATAGTGGAAAATAGATATATCACAGGCAAGTTAGATTGTACATTTCAGTGGAAACACAGGAAGACATTGATTAACTCAAATGACTGTAAGTATAAAAGTTAAAAGTAGAAACATTTTGTCAACCTCAAACAAATGACAAGAAGGGCATTTACAAAGAAAGGGCATGTTAAAAGTAAAATCAAAAACCAGGAGCTCCCCAATCCACAAGCTATTTCTTTTGTGTAATGAAAAAGAACTTTGATAGAGAAAATCATTTCTGCGTACACAGAGTGTTCGACAACCAATCCATGGCTTCTTCTAATCCTTCACCCTTTAATGCAGATGTTTTAAATAATTGGTAACGTCTATTTTTAATTGCAGCTAAGCCAAGTGATTGTGCTACTTCACTGATAGTCATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAAGCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTAACCTATAGAGAATTGTCGTTTTTCCGGCTCCATCTAAGCCTAAGATGAGAATTCTCCGTTCTTTACTTCCAAAGAGTCGAGAAAACAGACTAAATATACCACCCATTTATATGATAGCTTACTGTTTTGTGTTTGGAATAATTATTCAAGACTTTGGTTTGATGAAGTGGAACTGTGGGTTCAAACCCGTGACCAAAGCTACCACTTGTAGCCCACCTCGTGCCGAATTNTGGCCTCGGAGGG]
[+] EMBL CD073978 [AAATTCTTTTAAGATGTCACAAAAAACATAATACTACATGTAATACAAAGTAGTCGTCAGTATACCTTCGACGCGGCCTCGCGAGGTGTAGGTATGCAATTTCAATGTAGTTTATAATGGATTATATCCACTGATGAAAATGTATTATAGTGGAAAATAGATATATCACAGGCAAGTTAGATTGTACATTTCAGTGGAAACACAGGAAGACATTGATTAACTCAAATGACTGTAAGTATAAAAGTTAAAAGTAGAAACATTTTGTCAACCTCAAACAAATGACAAGAAGGGCATTTACAAAGAAAGGGCATGTTAAAAGTAAAATCAAAAACCAGGAGCTCCCCAATCCACAAGCTATTTCTTTTGTGTAATGAAAAAGAACTTTGATAGAGAAAATCATTTCTGCGTACACAGAGTGTTCGACAACCAATCCATGGCTTCTTCTAATCCTTCACCCTTTAATGCAGATGTTTTAAATAATTGGTAACGTCTATTTTTAATTGCAGCTAAGCCAAGTGATTGTGCTACTTCACTGATAGTCATACAACCAGATATATCTTGTTTATTTGCC ]
[-] EMBL CD079720 [ nAGAACTTTGATAGAGAGAATCATCTCTGCGTACACAGAGTGTTCGACAACCAATCCATGGCTTCTTCTAATCCTTCACCCTTTAATGCAGATGTTTTAAATAATTGGTAACGTCTATTTTTAATTGCAGCTAAGCCAAGTGATTGTGCTACTTCACTGATAGTCATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAAGCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTAACCTATAGAGAATTGTCGTTTTTCCGGCTCCATCTAAGCCTAAGATGAGAATTCTCCGTTCTTTACTTCCAAAGAGTCGAGAAAACAGACTAAATATACCACCCATTTATATGATAGCTTACTGTTTTGTGTTTGGAATAATTATTCAAGACTTTGGTTTGATGAAGTGGAACTGTGGGTTCAAACCCGTGACCAAAGCTACCACTTGTAGCCCACCTCGTGCCGAATTNTGGCCTCGGAGGG]
consensusID : consensus_6678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 704 fasta sequence
[CACCCAACACGGTTGAACTCCACTGGTCGTGTCCTCAGGTTTTCAATAGTTCTCTCTAACTTTGATCGGTTCGTGATCGAAATAAAACTGAACGACAGCCCCATACTACAAACTGTAAGTCATCTATTAGTTAAGATATGAATTAAGTTAAAATTTAAAAATTTACCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGCTAAGATTTTGAAAAAGAGAATATGAACATCAATAATTCTAAAGAATTTTACTGGGCTTTGTTTTAAAGAAAGAAGTTATACTGATATCTAGTGATTATCTCGATGATAATAATAATAGTAGTATTATCCAATACCATACATTTTGTCATAGTAAGGAATTTTAGCACCATAGTATAATTTCGCAACAAATATCTGTTTATAGGGTTGAGATCATAAGTCAATTGAAGCTAGACCATCGTCGAAAACCTGGAAGCACTGGAGAGCCGTTTTGTCCTATTGTGCAACTCCTTAGCCATGCGCATCCACGATCCCGCACTCGCGAGAGTCGAACCCAGGACCTACC]
[-] EMBL CD127368 [CACCCAACACGGTTGAACTCCACTGGTCGTGTCCTCAGGTTTTCAATAGTTCTCTCTAACTTTGATCGGTTCGTGATCGAAATAAAACTGAACGACAGCCCCATACTACAAACTGTAAGTCATCTATTAGTTAAGATATGAATTAAGTTAAAATTTAAAAATTTACCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGCTAAGATTTTGAAAAAGAGAATATGAACATCAATAATTCTAAAGAATTTTACTGGGCTTTGTTTTAAAGAAAGAAGTTATACTGATATCTAGTGATTATCTCGATGATAATAATAATAGTAGTATTATCCAATACCATACATTTTGTCATAGTAAGGAATTTTAGCACCATAGTATAATTTCGCAACAAATATCTGTTTATAGGGTTGAGATCATAAGTCAATTGAAGCTAGACCATCGTCGAAAACCTGGAAGCACTGGAGAGCCGTTTTGTCCTATTGTGCAACTCCTTAGCCATGCGCATCCACGATCCCGCACTCGCGAGAGTCGAACCCAGGACCTACC]
consensusID : consensus_6678#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence
[AGTCATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAAGCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTAACCTATAGAGAATTGTCGTTTTTCCGGCTCCAACTAAGCCTAAGATGAGAATTCTCCGTTCTTTACTTCCAAAGAGTCGAGAAAACAGACTAAATATACCACCCATTATATGATAGCTCCTCGTGCCG]
[-] EMBL CD083497 [AGTCATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAAGCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTATCCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATGGTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAACCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTAACCTATAGAGAATTGTCGTTTTTCCGGCTCCAACTAAGCCTAAGATGAGAATTCTCCGTTCTTTACTTCCAAAGAGTCGAGAAAACAGACTAAATATACCACCCATTATATGATAGCTCCTCGTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6678#0 AAATTCTTTTAAGATGTCACAAAAAACATAATACTACATGTAATACAAAGTAGTCGTCAG 60
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 TATACCTTCGACGCGGCCTCGCGAGGTGTAGGTATGCAATTTCAATGTAGTTTATAATGG 120
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 ATTATATCCACTGATGAAAATGTATTATAGTGGAAAATAGATATATCACAGGCAAGTTAG 180
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 ATTGTACATTTCAGTGGAAACACAGGAAGACATTGATTAACTCAAATGACTGTAAGTATA 240
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 AAAGTTAAAAGTAGAAACATTTTGTCAACCTCAAACAAATGACAAGAAGGGCATTTACAA 300
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 AGAAAGGGCATGTTAAAAGTAAAATCAAAAACCAGGAGCTCCCCAATCCACAAGCTATTT 360
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 CTTTTGTGTAATGAAAAAGAACTTTGATAGAGAAAATCATTTCTGCGTACACAGAGTGTT 420
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 ------------------------------------------------------------
consensus_6678#0 CGACAACCAATCCATGGCTTCTTCTAATCCTTCACCCTTTAATGCAGATGTTTTAAATAA 480
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 -------------------CACCCAACACGGTTGAACTCCACTGGTCGTGTCCTCA--GG 39
consensus_6678#0 TTGGTAACGTCTATTTTTAATTGCAGCTAAGCCAAGTGATTGTGCTAC--TTCACTGATA 538
consensus_6678#2 -----------------------------------------------------------A 1
consensus_6678#1 TTTTCAATAGTTCTCTCTAACTTTGATCGGTTC--GTGATCGAAATAAAACTGAACGACA 97
*
consensus_6678#0 GTC--ATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAA 596
consensus_6678#2 GTC--ATACAACCAGATATATCTTGTTTATTTGCCAATATCACCAGTACAGCACCACGAA 59
consensus_6678#1 GCCCCATACTACAAACTGTAAGTCATCTATTAGTTAAGATATGAATTAAGTTAAAATTTA 157
* * **** ** * * ** * * **** * ** ** * ** * * *
consensus_6678#0 GCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTAT 656
consensus_6678#2 GCTCTTCCTCCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTAT 119
consensus_6678#1 AAAATTTA-CCTCAAGCATAGAAAATAATTCTTGTTTGGAAATTCCAACTCGATCTTTAT 216
** ***************************************************
consensus_6678#0 CCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATG 716
consensus_6678#2 CCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATG 179
consensus_6678#1 CCATACTATCCACTACATAAATAATAGCATCAGTATTCGCGTAATAACAACGCCAATATG 276
************************************************************
consensus_6678#0 GTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAA 776
consensus_6678#2 GTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAA 239
consensus_6678#1 GTCGAATACTAGTTTGACCACCTAAATCCCATACTTGAAATTTAAGATTTTTGTGAACAA 336
************************************************************
consensus_6678#0 CCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTA-AC 835
consensus_6678#2 CCGTTTCTACATTGAATCCAATAGTAGGGATGGTTGTTACCACCTCACCAACTTGTA-AC 298
consensus_6678#1 CCGTTTCTACATTGAATCCAATAGCTAAGATTTTGAAAAAGAGAATATGAACATCAATAA 396
************************ *** * * * * *** * * *
consensus_6678#0 CTATAGAGAATTGTCGTTTTTCCGGCTCCATCTAAGCCTAAGATGAGAATTCTCCGTTCT 895
consensus_6678#2 CTATAGAGAATTGTCGTTTTTCCGGCTCCAACTAAGCCTAAGATGAGAATTCTCCGTTCT 358
consensus_6678#1 TTCTAAAGAATTTTACTGGGCTTTGTTTTAAAGAAAGAAGTTATACTGATATCTAGTGAT 456
* ** ****** * * * * * ** ** ** ** *
consensus_6678#0 TTACTTCCAAAGAGTCGAGAAAACAGACTAAAT--ATACCACCCATTTATATGATAGCTT 953
consensus_6678#2 TTACTTCCAAAGAGTCGAGAAAACAGACTAAAT--ATACCACCCATT-ATATGATAGCTC 415
consensus_6678#1 TATCTCGATGATAATAATAATAGTAGTATTATCCAATACCATACATT-TTGTCATAGTAA 515
* ** * * * * * ** * * ****** **** * * ****
consensus_6678#0 ACTGTTTT-GTGTT-TGGAATAATTATTCAA--GACTTTGGTTTGATGAAGTGGAACTGT 1009
consensus_6678#2 CTCGTGCC-G-------------------------------------------------- 424
consensus_6678#1 GGAATTTTAGCACCATAGTATAATTTCGCAACAAATATCTGTTTATAGGGTTGAGATCAT 575
* *
consensus_6678#0 GGGT---TCAAACCCGTGACCAAAGCTACCACTTGTAGCCCACCTCGTGCCGAATTNTGG 1066
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 AAGTCAATTGAAGCTAGACCATCGTCGAAAACCTGGAAGCACTGGAGAGCCGTTTTGTCC 635
consensus_6678#0 CCTCGGAGGG-------------------------------------------------- 1076
consensus_6678#2 ------------------------------------------------------------
consensus_6678#1 TATTGTGCAACTCCTTAGCCATGCGCATCCACGATCCCGCACTCGCGAGAGTCGAACCCA 695
consensus_6678#0 ---------
consensus_6678#2 ---------
consensus_6678#1 GGACCTACC 704
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||