These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 667 fasta sequence [ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAA-CCATTTAATTNTGAGATTT] [+] EMBL CD079782 [ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAA CCATTTAATTNTGAGATT ] [-] EMBL CD074040 [ AAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGTGTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAAAATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGTACATGACTATGACTTTCGTACATGTTCTGCAACAACTATTGACATATTTCATTCTTCTATTGTACGTCAAGATACATAAAGAAATAAATATGAACTTTTCTTTTTAAAAACTACCATAGTATATAATATTATTATCTATTTACCCTAAAGATAAATCAGTAAGGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGATCGGAGAACCCATTTAATTTTGAGATTT] consensusID : consensus_6683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TAATATGTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTACGGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTGGAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTCATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGTGAA] [-] EMBL CD166840 [TAATATGTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTACGGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTGGAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTCATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCAGCATCCAGATGAACAAATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGTGAA] consensusID : consensus_6683#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence [TCGTCGGGCACACTATTGCATATTTCATTCTTCTATTGTCGTCGTCTAAGAATAATATGACTTTCTTTTAAAACTACATGTATATAATATTATTATCTATTTACCCTAAAGTAAATCAGTAAAGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA] [-] EMBL AA791368 [TCGTCGGGCACACTATTGCATATTTCATTCTTCTATTGTCGTCGTCTAAGAATAATATGACTTTCTTTTAAAACTACATGTATATAATATTATTATCTATTTACCCTAAAGTAAATCAGTAAAGGGATAATAAAACATCTTGACGGCTTCAAACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCTTTCATCTTTTCTAAAAAAAAAGAAATTATGTTACAGGATCATTTTTTACTTGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6683#0 ATTTGGCACGAGGCAAATTGAGAATTTTTCTCACTTTTGTGAAGTCATCATTCAATCAGT 60 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 ------------------------------------------------------------ consensus_6683#0 GTCGAAGGTAAAAAATATTTATTTGACCACTGGAGAAGACGCCCAGCATCCAGATGAACA 120 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 ------------------------------------------------------------ consensus_6683#0 AATAGAAAAGTTTAATATGTTAAAAGGGGATTTAGAAAAGCATTCAGTTACTTTTGAGTG 180 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 ------------------------------------------------------------ consensus_6683#0 GACATTCTCAGATACCTTACATGATCGAGAGATACGATTTGATAGTGGATGGATTGTTAA 240 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 ------------------------------------------------------------ consensus_6683#0 AATTGGTCGTGGGTTGGATTATATACGTCGACCTGAACATAAATTTTGTGGTCTCGGTGT 300 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 ------------------------------------------------------TAATAT 6 consensus_6683#0 ACATGACTATGACTTTCGTACATGTTCTGCAACAACTA--TTGACATATTTCATTCTTCT 358 consensus_6683#2 ----------------------TCGTCGGGCACA-CTA--TTG-CATATTTCATTCTTCT 34 consensus_6683#1 GTTAAAAGGGGATCTAGAGAAGCATTCAGTTACTTTTGAGTGGACATTCTCAGATACCTT 66 ** * ** * * * *** * * * consensus_6683#0 AT-TGTACGTCAAGATACATAAAGAAATAAA---TATGAACTTTTCTTTTTAAAAACTAC 414 consensus_6683#2 AT-TGT-CGT-------CGTCTAAGAATAA----TATGA--CTTTCTTTT--AAAACTAC 77 consensus_6683#1 ACATGATCGAGAGATACGATTTGATAGTGAATGGTGTGAAAGGAAGGTGCTACTGGCTAC 126 * ** ** * * * * * *** * **** consensus_6683#0 CATAGTATATAATATTATTATCTATTTACCCTAAA-GATA-AATCAGTAAGGGGATAATA 472 consensus_6683#2 -AT-GTATATAATATTATTATCTATTTACCCTAAA-G-TA-AATCAGTAAAGGGATAATA 132 consensus_6683#1 GGTTACAAGAAGGTTTTTGGAAGATTTCTTGAAGATGGTACAGTTGGCAAAGTTTGGGTG 186 * * * ** * **** * * * ** * * * ** * * consensus_6683#0 AAACATCTTGACGGCTTCAA-ACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCT 531 consensus_6683#2 AAACATCTTGACGGCTTCAA-ACCTACAACATTTCGATAACTTTCCATTTTCATTAGTCT 191 consensus_6683#1 GAAGATCCGTATATCAGAAATAGTTATCCAACTGAGAATTTTTCTCACTTTCGTGAAGTC 246 ** *** * * ** * ** * * ** ** ** **** * * consensus_6683#0 TTCA-----TCTTTTCTAAAAAAAAAGAAATTATGTT-----ACAGGATCATTTTTTACT 581 consensus_6683#2 TTCA-----TCTTTTCTAAAAAAAAAGAAATTATGTT-----ACAGGATCATTTTTTACT 241 consensus_6683#1 ATCACTCAATCAGTCTCGAAGGTAAACAATATGTATTTGTCCACTGGAGCAGACCCCCCA 306 *** ** * ** *** ** * * ** ** *** ** * consensus_6683#0 TGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTATGTGTTAGAT 641 consensus_6683#2 TGAACAAGTTTTGTTTTTAATATTTTTTACTCATTTGGTCATTGTATTTACAGATGA--- 298 consensus_6683#1 GCATCCAGATGAACAAATAGAAAAGTTTAAT-ATGTTAAAAGGGGATTTAGAAAAGCATT 365 * * ** * ** * **** * ** * * * ***** consensus_6683#0 CGGAGAACCATTTAATTNTGAGATTT---------------------------------- 667 consensus_6683#2 ------------------------------------------------------------ consensus_6683#1 CAGTTACTTTTGAGTGGACATTCTCAGATACCTACTGATCGAGAGATACGATTTGATAGT 425 consensus_6683#0 --- consensus_6683#2 --- consensus_6683#1 GAA 428 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||