These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 666 fasta sequence [CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGTT] [+] EMBL CD079808 [CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGT ] [-] EMBL CD074066 [ CGTAAAACGTGCTCTTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAACAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACAAACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCCCACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTTGCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAACAGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTAACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCTGGTGGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAAAGATTTGTT] consensusID : consensus_6690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 167 fasta sequence [GCCCGGTACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG] [+] EMBL CD168080 [GCCCGGTACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG] [+] EMBL CD168086 [gaCCGGTACCCTGAATTTGACTTCCGCTTTTGGTTGGATTGGCTCTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAACAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6690#0 CGAGCCAAAAATTCGGCACGAGGGCGAAAATCCAAAGAAGAGCTGCCGTAAAACGTGCTC 60 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 TTGATCTAAAGATGGCCCGATATCGAGCACCGTTTCACCAACTTCGAATACAATATGGAA 120 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CAAATAAAGGGAAGAACTATGTCGAGGAGGAAGATCGCTTCTTAATCTGCATGCTTCACA 180 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 AACTTGGTTTCGATCGTGACAATGTATATGATGACTTACGTCTTGCAGTTCGCTTAGCCC 240 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 CACAGTTTCGATTTGATTGGTTTTTGCGATCTCGCACAGCAATGGAGCTACAAAGACGTT 300 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 GCAGTACTCTTATTACTTTGATCGAGAGAGAAATATGTGACTTGGAAGACCGAACAAAAC 360 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 AGCGCAGTGGAGCAGGCGCGAATAATTTATCACTCACTCCTGCAAATTCCGGACCATCTA 420 consensus_6690#1 ------------------------------------------------------------ consensus_6690#0 ACACATCCACAGTATCCAACCAAAAGCGGAAGTCAACTTCAGCT---GGTGGGATTGGCT 477 consensus_6690#1 -------------GCCCGGT---ACCCTGAATTTGACTTCCGCTCTTGGTTGGATTGGCT 44 ** * * *** * ***** *** *** ********* consensus_6690#0 CTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAA 537 consensus_6690#1 CTGATTCAACTGCAGAAATGTCCGGAAACTCAAAGAAAAAGAAGGTCACTGCTTAAATAA 104 ************************************************************ consensus_6690#0 CAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTT 597 consensus_6690#1 CAGTGATTTGTAAATGTCTCTGTCTTATATTCTTGTTGTAGGCCTCTTGCATTTGATTTT 164 ************************************************************ consensus_6690#0 ATGTACTCGTTTCCCCTGATTTCATACTGGTGTATTGTTTATCAAATCCTACATAAATAA 657 consensus_6690#1 ATG--------------------------------------------------------- 167 *** consensus_6690#0 AGATTTGTT 666 consensus_6690#1 --------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||