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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1046 fasta sequence
[TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATAACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGAGAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAACGAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCACAACGGTTCAAGTTCATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATCCCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGATACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCAGAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATTTAATGGTCTATTATTATTATTGATATTATTCTTACCTCCATCCATTTTAGATTTAGAAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTAATCAAGATAATTCTAATACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACCGTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAATTCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATAATAAAATCAAAAAAAACTATTAATCAATCAAAT]
[+] EMBL CD079903 [TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATAACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGAGAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAACGAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCACAACGGTTCAAGTTCATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATCCCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGATACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCAGAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAAC ]
[-] EMBL CD074100 [ nAATATAAATTAGTGTAGTANAAACATTGGTAGACTTCCGATCTCAGAGAATANAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCAGAGTCCCTAATCATTAGTTATGATAATTACGTCGACCACAACTACGTAGTCTGTCTGCACACACACACACAGCTCAGTNTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGATCAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATTTAATGGTCTATTATTATTATTGATATTATTCTTACCTCCATCCATTTTAGATTTAGAAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTAATCAAGATAATTCTAATACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACCGTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAATTCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATAATAAAATCAAAAAAAACTATTAATCAATCAAAT]
consensusID : consensus_6692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 717 fasta sequence
[TATACAAACAGTATTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAGAAACAGCAAATTTGATCAATTACCTTCAGAAATACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATATTCTAATACCATACAACCAATCACTAATA]
[+] EMBL BF936509 [TATACAAACAGTATTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAGAAACAGCAAATTTGATCAATTACCTTCAGAAATACATCAGACTTATTATCAGCTACTATGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATATTCTAATACCATACAACCAATCACTAATA]
[+] EMBL BF936785 [ TTTCGTATTGATGACTATTCAGCATACGATCAAGAATCGGATATATCAGACAATAATAACAAATCCAATCAAATGTTGCCAATTTATTGTTCCATCATGGGTTTAATAATTATTTCATTATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGAAGCGTCAAAAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAACATCTTGTCTGGATAATAATCATTTACAACATCGAAGAATTTCATCAGGTTTCGTAAATAATAATGCTCATTTACCAAATCATTCACCTCAGTCTGCAAATGAACTTAATAACATTGCTGATTCAACACCCGATAACGATATTAACAATCAACTTCAATTTAATGATATTATTTATGGTCATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAGCTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGTTATTTGTTATCGTTTATCTCAACATGGAT GCAAGAACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6692#0 TATTTATTGATTTGATCTAATAGATTTCATAATAGCACAATGATATTTAAAAAAAGAATA 60
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 ACTGACTAGATGAAAAGTAAAAATACGTTGAAAACCAAACATATAGAACATAGTTCAAGA 120
consensus_6692#1 ---------------------------------------TATACAAACAGTATTTC--GT 19
*** * * ** *** *
consensus_6692#0 GAAAAGGGTGAAGTAGTGAACAAAATCAAGAAAAGTCAAAAATAAGAAACAATTCAAAAC 180
consensus_6692#1 ATTGATGACTATTCAGCATACG--ATCAAGAA---TCGGATATATCAGACAATA-ATAAC 73
* * * ** ** ******** ** * *** * ***** * ***
consensus_6692#0 GAATATATTTAAAGTACTGCAAGGTCAGTTACACTTAACGCAGAACATGGTACATGTGCA 240
consensus_6692#1 AAATCCAATCAAA-TGTTGCCAATTTATTGTTCCATCATGGGTTTAATAAT-TATTTCAT 131
*** * * *** * *** * * * * * * * * ** * ** *
consensus_6692#0 CAACGGTTCAAGTT-CATACAATCTATTAGAACAATAAGATGAAATTGTGAGCGCAGATC 299
consensus_6692#1 TATTATGTTATGTTGTATACAAATTATGGCGACAAAGAGA----------AGCGTCAA-- 179
* * * *** ****** *** **** *** **** *
consensus_6692#0 CCACAGTAGTAAAGCAAGTGAGAGAACTAGTGGTAATAGAAACTATTTGAAATACGAGAT 359
consensus_6692#1 --AAAATGCCAAATTAGCTGATTCGTACAATAGTAACAAAACTGATTTATTAGATAGAAC 237
* * * *** * *** * * **** * ** **** * * *
consensus_6692#0 ACCATTCAAGAGGAAAATATAAATTAGTGTAGTAAAAACATTGGTAGACTTCCGATCTCA 419
consensus_6692#1 ATCTTGTCTGGATAATA-ATCATTTACAACATCGAAGAATTTCATCAGGTTTCG----TA 292
* * * * ** * ** * *** * ** * ** * ** ** *
consensus_6692#0 GAGAATAAAATGAGTGAATGAACCTGGACCACTCCAATTGATTTTGAGCTATTTCACTCA 479
consensus_6692#1 AATAATAATGCTCATTTACCAAATCAT-TCACCTCAGTC---TGCAAATGAACTTAATAA 348
* ***** * * ** *** ** * * * * * * * *
consensus_6692#0 GAGTCCCTAATCATTAGTTATGATAATTACGTCGACCA-CAACTACGTAGTCTGTCTGCA 538
consensus_6692#1 CATTGCTGATTCAACACCC--GATAACGATATTAACAATCAACTTC--AATTTAATGATA 404
* * * * *** * ***** * * ** * ***** * * * * *
consensus_6692#0 CACACACACACAGCTCAGTCTAATAGTCAGTTTCCTTACAGACTGATGTCATGTCTTGAT 598
consensus_6692#1 T---TATTTATGGTC--ATGAAAAAGCACCATTACTTGGAAAATTAGATCATTCGAACAG 459
* * * * ** ** ** *** * * * * **** *
consensus_6692#0 CAAAATTATTTCTTTTGGTGCATCTTGTTTATTTACAAACACAACAAACCTTTTGCAATT 658
consensus_6692#1 CTCATTTAATAATTTTGAACAACAACCAATAACAGTGATCCCAATGAATATACTAGGAGT 519
* * *** * ***** * ** * * *** ** * * * *
consensus_6692#0 TAATGGTCTATTATTATTATTGATATTATTCTTA----CCTCCATCCATTTTAGATTTAG 714
consensus_6692#1 TATTTGT-TATCGTTTATCTCAACATGGATGGCAAGAACTGGCTAGTATGCTGGATTTAG 578
** * ** *** ** * * * ** * * * * ** * *******
consensus_6692#0 AAACAAGCAAATTTGATCAATTACCTTCAGAAATAACATCAGACTTATTATCAGCTACTA 774
consensus_6692#1 AAACA-GCAAATTTGATCAATTACCTTCAGAAATA-CATCAGACTTATTATCAGCTACTA 636
***** ***************************** ************************
consensus_6692#0 TGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAATGTA-ATCAAGATAATTCTAAT 833
consensus_6692#1 TGGAAGCTCAAACAACTGCTGAATCTCATTTAAAACAAAATGTATCAAGATA-TTCTAAT 695
************************************** * ********* *******
consensus_6692#0 ACAATACAACCAATCACTAATAATAATAATAATAATAATAAGAATAACTTAACAATGACC 893
consensus_6692#1 ACCATACAACCAATCACTAATA-------------------------------------- 717
** *******************
consensus_6692#0 GTTTCAATGTTTCAATATATGTGCCTACAAAATACAGTGAATTTAGGTCAACTAATGAAT 953
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 TCTTTACAAAAACTTAATAGTCCAGATCTTGTCGCTTTAATTCAACAACAAATTGGAATA 1013
consensus_6692#1 ------------------------------------------------------------
consensus_6692#0 ATAAAATCAAAAAAAACTATTAATCAATCAAAT 1046
consensus_6692#1 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||