These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 757 fasta sequence [TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTATAAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAAC-ATCAAACAT-ATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT] [+] EMBL CD079907 [TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTATAAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAAC ATCAAACAT ATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTT ] [-] EMBL CD074104 [ TCGGAANAATCATCCTTGGATTATTGTAATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAGAATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTAGATGTTTAATTGTTGTTGTCATATAATTCTCAACAATC AACATAATATTTTCCTCTTTCAAACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT] [+] EMBL CD196968 [ TGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAATAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAAATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACTGATTTTGGATATACTAGAATGACAATACATAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAACATGGGCCAGGTTTATATACTTGTCATAATCAA ] consensusID : consensus_6693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 408 fasta sequence [AAAAGGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAACATGGGCCAGCACAGAGTCGTCTCAATCACTA] [-] EMBL CD190048 [AAAAGGAGTATACCTTATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAACACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGTGAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCAGATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACTGATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATTTCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAACATGGGCCAGCACAGAGTCGTCTCAATCACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6693#0 TTCTATTACTTTTTATTTTATGGATGGAAAACGTTAGTGATGCAATATGACTGGTTGTAT 60 consensus_6693#1 ------------------------------------------------------------ consensus_6693#0 AAGGATTTACTAGAAGCGAATAAACCAGAAAATCGGAAAAATCATCCTTGGATTATTGTA 120 consensus_6693#1 ------------------------------------------------------------ consensus_6693#0 ATAGGTCATAGACCAATGTATTGTTCAAATAATTTTGATCCAATGCATTGTGATTTTGAG 180 consensus_6693#1 ------------------------------------------------------------ consensus_6693#0 AATAATATTGTACGCACTGGATTCGACATATCACCTAACCATCATAAAAGAGTATACCTT 240 consensus_6693#1 --------------------------------------------AAAAGGAGTATACCTT 16 *** *********** consensus_6693#0 ATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAA 300 consensus_6693#1 ATGGGACTGGAAAACTTATTTTATCAGTATGGTGTGGATTTAATCATTGCTGGTCATGAA 76 ************************************************************ consensus_6693#0 CACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGT 360 consensus_6693#1 CACTCATATGAAAGATTTTGGCCAGTTTACAACAGAACCGTTTGTAATTCTACAACAAGT 136 ************************************************************ consensus_6693#0 GAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCA 420 consensus_6693#1 GAAAATCCATATGAAAATCCAGATGCTCCAGTACATATTGTCAGTGGAGCTGCTGGATCA 196 ************************************************************ consensus_6693#0 GATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCATTTCGTACAACT 480 consensus_6693#1 GATGAAGGTAAAGATACATTTATTTATGGTGGAAAACCTTGGTCAGCACTTTGTACAACT 256 ************************************************ ** ******** consensus_6693#0 GATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATT 540 consensus_6693#1 GATTTTGGATATACTAGAATGACGATACGTAATGTTACTCATTTAGAAATTGAACAAATT 316 ************************************************************ consensus_6693#0 TCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCACAATCATCAAGGATAAA 600 consensus_6693#1 TCAGTGGAAAATGAAAGAAAAGGTCAAGTGATTGATTCCTTCTCAATCATCAAGGATAAA 376 ****************************************** ***************** consensus_6693#0 CATGGGCCAGGTTTATATACTTGTCATAATAAAGATTCATTTGATTATTACGATATTCTA 660 consensus_6693#1 CATGGGCCAG---CACAGAGTCGTCTCAATCACTA------------------------- 408 ********** * * * * *** *** * * consensus_6693#0 GATGTTTAATTGTTGTTGTCATATAATTCTCAACATCAAACATATATTTTCCTCTTTCAA 720 consensus_6693#1 ------------------------------------------------------------ consensus_6693#0 ACTCTGTGATTATTACTTTTGAGCGTAATATATTTTT 757 consensus_6693#1 ------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||