These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT] [+] EMBL CD079941 [CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGT ] [-] EMBL CD074138 [ aaGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT] consensusID : consensus_6698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 530 fasta sequence [AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC-AATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC] [+] EMBL CD140029 [AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC AATCCA ] [-] EMBL CD140014 [ AAATCTNACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTCCTCATTATCTTAAATGTTATACCTNTAATTCTGTACTTTCAAATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6698#0 CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGG 60 consensus_6698#1 -----------------------------------------------AAAGTT---GCGA 10 *** * * consensus_6698#0 ATCACTTTTCTT-CTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATA 119 consensus_6698#1 AACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTT----CTTGGTTG 66 * * ** * * *** * ** ** ** ** * * *** ** ** * consensus_6698#0 AATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTT 179 consensus_6698#1 CGTCTA-TCTTAGTTTAGGCGGTTGATTAGTACTATTA-----TGTTTAACACCAACAGT 120 *** * ** * ** * * * * ** ** *** * ** * consensus_6698#0 TCATACCCTGGAAATCAGTTCCCGGTAGCGTT-TGGGGTGGTAAAGAACGGAAAATCCCC 238 consensus_6698#1 ACACATC--AAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTC 178 ** * * * **** * * ** * *** *** * ** ** * consensus_6698#0 CGTCTAACTAATGCGCGTAAAGA--AGCGTTTTTGGATGAGCTTC---TTATTTCCCGCC 293 consensus_6698#1 AGT--AACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTAC 236 ** ***** ** * *** * * *** * ** * **** ** * consensus_6698#0 AAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAG 353 consensus_6698#1 TAAATCTTA-GCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTCA 295 *** * ** * *** * * ** * * * * ** ** **** * consensus_6698#0 CTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 413 consensus_6698#1 ATCC-----AGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 350 * * ************************************************* consensus_6698#0 AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 473 consensus_6698#1 AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 410 ************************************************************ consensus_6698#0 GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 533 consensus_6698#1 GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 470 ************************************************************ consensus_6698#0 CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 593 consensus_6698#1 CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 530 ************************************************************ consensus_6698#0 CATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT 638 consensus_6698#1 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||