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Schistosoma mansoni
cluster # 6698 cluster # 6698       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6698#0 length = 638 sequences # 2  
consensus_6698#1 length = 530 sequences # 2  

consensusID : consensus_6698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence
                              [CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT]

[+] EMBL CD079941             [CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGT ]
[-] EMBL CD074138             [                     aaGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGGATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAAATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTTCATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCGTCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT]


>consensus_6698#0 CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGG ATCACTTTTCTTCTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATAA ATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTTT CATACCCTGGAAATCAGTTCCCGGTAGCGTTTGGGGTGGTAAAGAACGGAAAATCCCCCG TCTAACTAATGCGCGTAAAGAAGCGTTTTTGGATGAGCTTCTTATTTCCCGCCAAAACCA TATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAGCTGATGA GAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATT TGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAA ACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTT TCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGACCATAAAT ACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT



consensusID : consensus_6698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 530
fasta sequence
                              [AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC-AATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC]

[+] EMBL CD140029             [AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCTTGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGTACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAGTAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTC AATCCA                                                                                                                                                                                                                                      ]
[-] EMBL CD140014             [                                                                                                                                                                                                  AAATCTNACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAATCTTAGCTTCTTTCCTCATTATCTTAAATGTTATACCTNTAATTCTGTACTTTCAAATCCAGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC]


>consensus_6698#1 AAAGTTGCGAAACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTTCT TGGTTGCGTCTATCTTAGTTTAGGCGGTTGATTAGTACTATTATGTTTAACACCAACAGT ACACATCAAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTCAG TAACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTACTAAA TCTTAGCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTCAATCCA GATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTAAACAATTTGA TCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAAGAACTAAACG TTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTTCTTGTTTTCT CTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6698#0      CCAGAATTCTGCACGAGGCACAGGGTCGTCCTTAAGCTATAATCCCGGCGGTTTCAGTGG 60
consensus_6698#1      -----------------------------------------------AAAGTT---GCGA 10
                                                                        ***   * * 

consensus_6698#0      ATCACTTTTCTT-CTGAGTATCTTTTTAATTAACAATTACCTGAGGTTTGATCTGGGATA 119
consensus_6698#1      AACGTTTAGATAATTAAGTGACATTGAGGAAAATGATCACTTCAAGTT----CTTGGTTG 66
                      * *  **   *   * ***  * **      **  ** ** * * ***    ** ** * 

consensus_6698#0      AATCTGCTTTTTGGTTTCTTACGTATTCAATGCTTCTAACAAGTGTCCGTTATGGACGTT 179
consensus_6698#1      CGTCTA-TCTTAGTTTAGGCGGTTGATTAGTACTATTA-----TGTTTAACACCAACAGT 120
                        ***  * ** * **       *  * * * **  **     ***     *   **  *

consensus_6698#0      TCATACCCTGGAAATCAGTTCCCGGTAGCGTT-TGGGGTGGTAAAGAACGGAAAATCCCC 238
consensus_6698#1      ACACATC--AAAGCTCAGGCGTCTATTTGATTATTGGGACGTAGTTTAAGGTAATAATTC 178
                       ** * *    *  ****    *  *    ** * ***  ***    * ** **     *

consensus_6698#0      CGTCTAACTAATGCGCGTAAAGA--AGCGTTTTTGGATGAGCTTC---TTATTTCCCGCC 293
consensus_6698#1      AGT--AACTACTGTTTGAAAATCCTACACTGTTTAAGTCAGTTAGAGGTTATGTCATTAC 236
                       **  ***** **   * ***    *   * ***   * ** *     **** **    *

consensus_6698#0      AAAACCATATGTACCTTCAGGAACCGTATTTCAGTGAAGAAGTTGAAGCTGCTACTCTAG 353
consensus_6698#1      TAAATCTTA-GCTTCTTTTCTCATTATCTTAAATGGTATACCTTTAATTCTGTACTTTCA 295
                       *** * ** *   ***     *   * **  *  * * *  ** **     **** *  

consensus_6698#0      CTGATGAGAAAATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 413
consensus_6698#1      ATCC-----AGATCCGTGAATTGCAAATGGAAGACAAGTTTTTCTATGATCGATATGCTA 350
                       *       * *************************************************

consensus_6698#0      AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 473
consensus_6698#1      AACAATTTGATCGTCGTTTTCCTACGCGTAATCTGGAAACATTTTGGGATAAATTGTCAA 410
                      ************************************************************

consensus_6698#0      GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 533
consensus_6698#1      GAACTAAACGTTATGATGTTTGACAAATTAGGCATGATGATGACATTTGTTTTATGAGTT 470
                      ************************************************************

consensus_6698#0      CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 593
consensus_6698#1      CTTGTTTTCTCTATAGTTTACATTACAAACTATACACTTATGTATATATATTCAAATGAC 530
                      ************************************************************

consensus_6698#0      CATAAATACTGAAAGTTCCTAGATGACATTTTTCAATAAAACGTT 638
consensus_6698#1      ---------------------------------------------
                                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)