These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6704#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1043 fasta sequence [AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG-TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA-TGAAATCCATTACCACTCCACA-GGAA-TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT-GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA-TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT] [+] EMBL CD080341 [AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA TGAAATCCATTACCACTCCACA GGAA TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACT ] [+] EMBL BE505110 [ CCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTGTTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATTGAAATCCATTACCACTCCACATGGAATTTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATATAAATGGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATGAGAAAANTCTTTTTAACA ] [-] EMBL AI977184 [ ACCACTTAATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT] consensusID : consensus_6704#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT] [-] EMBL CD074260 [ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6704#0 AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGG 60 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 AGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGA 120 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 TCGCTTAGAACTGACCAATACTGTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATT 180 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 ATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATGAAATC 240 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 CATTACCACTCCACAGGAATTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAA 300 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 TACAAATGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAATCT 360 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 TTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGC 420 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 TGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATC 480 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 CAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGA 540 consensus_6704#1 ------------------------------------------------------------ consensus_6704#0 TTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACAT 600 consensus_6704#1 ----------------------------------------ATTCAAANAATTAAAGACAT 20 ******* *********** consensus_6704#0 CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 660 consensus_6704#1 CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 80 ************************************************************ consensus_6704#0 TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 720 consensus_6704#1 TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 140 ************************************************************ consensus_6704#0 TCTGAGACTTTCTTGAG--------------TTTATTGTATTCGGAACTTGCATTCTGTT 766 consensus_6704#1 TCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTT 200 ***************** ***************************** consensus_6704#0 TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 826 consensus_6704#1 TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 260 ************************************************************ consensus_6704#0 TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 886 consensus_6704#1 TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 320 ************************************************************ consensus_6704#0 TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 946 consensus_6704#1 TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 380 ************************************************************ consensus_6704#0 CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 1006 consensus_6704#1 CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 440 ************************************************************ consensus_6704#0 AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT----------------------- 1043 consensus_6704#1 AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGT 500 ************************************* consensus_6704#0 ------------------------------------------------------------ consensus_6704#1 TCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTC 560 consensus_6704#0 -------------------------------------------- consensus_6704#1 TTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT 604 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||