Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6704 cluster # 6704       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6704#0 length = 1043 sequences # 3  
consensus_6704#1 length = 604 sequences # 1  

consensusID : consensus_6704#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1043
fasta sequence
                              [AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG-TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA-TGAAATCCATTACCACTCCACA-GGAA-TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT-GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA-TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT]

[+] EMBL CD080341             [AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGGAGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTG TTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTA TGAAATCCATTACCACTCCACA GGAA TTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATACAAAT GGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAA TCTTTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGCTGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATCCAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGATTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACATCAGAGACAAACTTGGACT                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BE505110             [                                                                CCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGATCGCTTAGAACTGACCAATACTGTTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATTATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATTGAAATCCATTACCACTCCACATGGAATTTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAATATAAATGGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATGAGAAAANTCTTTTTAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AI977184             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACCACTTAATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT]


>consensus_6704#0 AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGG AGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGA TCGCTTAGAACTGACCAATACTGTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATT ATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATGAAATC CATTACCACTCCACAGGAATTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAA TACAAATGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAATCT TTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGC TGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATC CAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGA TTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACAT CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA TCTGAGACTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGC ATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAG ACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACT AAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTC TAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCC AATAGTATGCTAATAAACGTTCT



consensusID : consensus_6704#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 604
fasta sequence
                              [ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT]

[-] EMBL CD074260             [ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT]


>consensus_6704#1 ATTCAAANAATTAAAGACATCAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACT TTGAGGAAAATTGCGGATACTTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTT AGTTCCTATGTCTAAAGGTATCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTA TTCGGAACTTGCATTCTGTTTATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTC TTGAAACATCACTTCCAAAATATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTT CTTGAGTCAAATTACAATTTTCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAAT ATTTCGATCAACATGAATTTCGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAA TAAAACTTTCCCTAATGTAAAGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCA CCACCTAACGTCAATTATGTTCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAAT GATTAAATCCTGATGATTTCTTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAAT GTCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6704#0      AGGCCAAAGAATCTAGATATTGGCTTGAAAATGATGCAAAAATTAGAGCTGTTCACAAGG 60
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      AGTTCCAACCTATGATGATTTTAGAGAGCTTGTCGCTGGATGCCATTTGAAGCCTCTGGA 120
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      TCGCTTAGAACTGACCAATACTGTTGGTCAAAGGTCCAGCTGGAACTATTCAGCAATATT 180
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      ATCAAATAATAATAGCTTGTTTCTGGAACCTGGAATGAATTCAACTATCCCTATGAAATC 240
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      CATTACCACTCCACAGGAATTCGTTGTACAGTGGCGTCATATCAAATCATCATCCGCTAA 300
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      TACAAATGGCGCTTTATTAGAGTTATTGTTCAATCAAAATAATGAAGTATTAGAAAATCT 360
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      TTTTAACACTGGACTGGGTGTGTCTTTTTTACCCGAAATACTTTCAGTATTAAATCATGC 420
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      TGTTGATAACACGGACACTATATTATCATCATCTGATTATAATATCAACATCGTAATATC 480
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      CAAGGTTTCTATGATTCTTGCAAGTTTTCAAAAGTCTAAACAATTTTCTTTAGCAGTCGA 540
consensus_6704#1      ------------------------------------------------------------
                                                                                  

consensus_6704#0      TTGTTTGCTAGATAGTGAAAAAGAAACTGCACACCACTTAATTCAAAANATTAAAGACAT 600
consensus_6704#1      ----------------------------------------ATTCAAANAATTAAAGACAT 20
                                                              *******  ***********

consensus_6704#0      CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 660
consensus_6704#1      CAGAGACAAACTTGGACTTTTTGAAGATGATGGTGAAACTTTGAGGAAAATTGCGGATAC 80
                      ************************************************************

consensus_6704#0      TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 720
consensus_6704#1      TTTTAAATTGAGTAATAGTTGTTATGCTGTAGATGATGTTAGTTCCTATGTCTAAAGGTA 140
                      ************************************************************

consensus_6704#0      TCTGAGACTTTCTTGAG--------------TTTATTGTATTCGGAACTTGCATTCTGTT 766
consensus_6704#1      TCTGAGACTTTCTTGAGAAATTTTTCTTGAGTTTATTGTATTCGGAACTTGCATTCTGTT 200
                      *****************              *****************************

consensus_6704#0      TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 826
consensus_6704#1      TATTCGGCACATGCATGTTATTGTTTGTCTTTGTATTCTCTTGAAACATCACTTCCAAAA 260
                      ************************************************************

consensus_6704#0      TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 886
consensus_6704#1      TATTCCCAGTTTAGACAGAAGCTCAACGTGCATTCAAGTTCTTGAGTCAAATTACAATTT 320
                      ************************************************************

consensus_6704#0      TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 946
consensus_6704#1      TCCTTTATGGAACTAAATGTCCGTCATTCTTAACCTCAATATTTCGATCAACATGAATTT 380
                      ************************************************************

consensus_6704#0      CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 1006
consensus_6704#1      CGACCTATAAACTCTAAAAACATTTTTTACTTTATGAAAATAAAACTTTCCCTAATGTAA 440
                      ************************************************************

consensus_6704#0      AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCT----------------------- 1043
consensus_6704#1      AGCATATTCCTTCCAATAGTATGCTAATAAACGTTCTTCACCACCTAACGTCAATTATGT 500
                      *************************************                       

consensus_6704#0      ------------------------------------------------------------
consensus_6704#1      TCGACACCCCACACAGTTCTGTTGTAAAACACAAAATAATGATTAAATCCTGATGATTTC 560
                                                                                  

consensus_6704#0      --------------------------------------------
consensus_6704#1      TTATAAAGTAGCTGGTGATAATTGGTTCGAAACAATAAATGTCT 604
                                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)