These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCATTACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCTATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGAAACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGTTAAATTAAATTATATTGAGCGAACAATTGTTTCCAATAACTTCATCATCAGGCTCTACAGTTATAAGTCCATAATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATTCTTTTTAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTATATGTGCATTTGATGGGTTAAATGAACACTATTATTTTTAAAGTTAGTGTTTATATTCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAAATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTTGCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG] [+] EMBL CD127454 [CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCATTACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCTATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGAAACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGTTAAATTAAATTATATTGAGCGAACAATTGTTTCCAATAACTTCATCATCAGGCTCTACAGTTATAAGTCCATAATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATTCTTTTTAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTATATGTGCATTTGATGGGTTAAATGAACACTATTATTTTTAAAGTTAGTGTTTATATTCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAAATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTTGCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG] consensusID : consensus_6709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCTAAACTGAATATTATAAACCTCTTCCCTCCCTTTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGATAACACCCTTCTTATTACGTATTATATTCACACAACAATCTTATCATTATTACTATTTGTCATTATTATCTCAATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACGATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTACTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTGAAGTATAAATGTCGTAACAGATGCAGACATTCACCATTTTTAACATATAACGTCAAATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAACTGTAGAGCCTGATGATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTTTTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATCTTTAATGCTNTCATTTGTCCGACAATGGAATT] [+] EMBL CD093132 [CCTAAACTGAATATTATAAACCTCTTCCCTCCCTTTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGATAACACCCTTCTTATTACGTATTATATTCACACAACAATCTTATCATTATTACTATTTGTCATTATTATCTCAATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACGATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTACTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTGAAGTATAAATGTCGTAACAGATGCAGACATTCACCATTTTTAACATATAACGTCAAATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAACTGTAGAGCCTGATGATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTTTTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATCTTTAATGCTNTCATTTGTCCGACAATGGAATT] consensusID : consensus_6709#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [ATACTTTTACTATGGCTTCATAATAATAACATACCACTTAACAATTTATACAGTTTCATAAATTTACCCTTAAAGGATCTTTGTTTCATTATCAACGGGTTATTGATTGTAGTAGTATATCAAAGTTGAATAAATCAATTCATTTTTTCCTTTTTCAGTTGTATTGCAAAATTGTCCAGGAATATATGGGAAATAAGGGATTTGTTTTTTCAATTCACACATAAATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTTTTTTTTAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATTCAAAAATGAACAATTTTTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAATTATTGGGATATTTTACAAAG] [+] EMBL CD074356 [ATACTTTTACTATGGCTTCATAATAATAACATACCACTTAACAATTTATACAGTTTCATAAATTTACCCTTAAAGGATCTTTGTTTCATTATCAACGGGTTATTGATTGTAGTAGTATATCAAAGTTGAATAAATCAATTCATTTTTTCCTTTTTCAGTTGTATTGCAAAATTGTCCAGGAATATATGGGAAATAAGGGATTTGTTTTTTCAATTCACACATAAATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTTTTTTTTAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATTCAAAAATGAACAATTTTTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAATTATTGGGATATTTTACAAAG] consensusID : consensus_6709#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [GTTATGAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAATGAATTTGACAATACTATATGTTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATATACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTCATTTAATAAAGGTCAAAATGATCTGCAATAAAGTGTCCAGTCACAATCAGTATAATAGTAATATAGGAAAACTGAAAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATCTTGTCAATTGAGATAATAATGATAAATAGTAATAGTAATAATAATAAGATTGTTGTGTGAATATAATATGTAATAAAAGGGGTGTTATCAAGGTAATTACGATAAACGAATTGGGAATGATGGATGTGA] [+] EMBL CD187656 [GTTATGAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAATGAATTTGACAATACTATATGTTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATATACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTCATTTAATAAAGGTCAAAATGATCTGCAATAAAGTGTCCAGTCACAATCAGTATAATAGTAATATAGGAAAACTGAAAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATCTTGTCAATTGAGATAATAATGATAAATAGTAATAGTAATAATAATAAGATTGTTGTGTGAATATAATATGTAATAAAAGGGGTGTTATCAAGGTAATTACGATAAACGAATTGGGAATGATGGATGTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6709#0 CGTTTGCTACGATTACGATTCGTCGATTTTAACGGTTGGGACGTATTACGTATGCTTCAT 60 consensus_6709#2 ---------------------------------------------------ATACTT--T 7 consensus_6709#3 ----------------------------------------------------------GT 2 consensus_6709#1 --------------------------CCTAAACTGAATATTATAAACCTCTTCCCTCCCT 34 * consensus_6709#0 TACCGCCTACGTCAACGTAGACAACTTTCTACATCGACTTCGTAGTTTACACAACTTTCT 120 consensus_6709#2 TAC----TATGGCTTCATA-ATAATAACATACC---ACTTAACAATTTATACAGTTTCAT 59 consensus_6709#3 TAT-GAGTCCATCATTATTGGAGATATTTTACAAAGGCCAAAAATGAGGCATGTATTAAT 61 consensus_6709#1 TTTTGATTACCTCTATCTTAATCTTCACATCCATCATTCCCAATTCATAATTACCTTGAT 94 * * * * * * ** * consensus_6709#0 ATACTCAATTCTCATATTCGAATCCCACAGCACATACATTGGCATAAACAATCCACACGA 180 consensus_6709#2 AAATTTA---CCCTTAAAGGATCTTTGTTTCATTATCAACGG-GTTATTGATTGTAGTAG 115 consensus_6709#3 GAATTTGACAATACTATATG-TTAAAAAAAGGTGAACATTTGCATCTGTTACAACATATA 120 consensus_6709#1 AACACCCTTCTTATTACGTA-TTATATTCACAC-AACAATCTTATCATTATTACTATTTG 152 ** ** * consensus_6709#0 AACGTTCAAAATCACCTACGAACAAGTGCGTGGTTGCTGAGT-TAAATTAAATTATATTG 239 consensus_6709#2 TATATCAAAGTTGA---ATAAATCAATTCATTTTTTCCTTTT-TCAGTTGTATTGCAA-A 170 consensus_6709#3 TACTTCAAAATTGTATTATTTGTAATTTAGAAAGGTC--ATT-TAATAAAGGTCAAAATG 177 consensus_6709#1 TCATTATTATCTCA---ATTGACAAGATGGAATTCTCCTGCTATGAATTTTATTCATACG 209 * * * * * * * * * * consensus_6709#0 AG----CGAACAATTGTTTCCAATAACTTCATCATCAGGC-TCTACAGTTATAAGTCCAT 294 consensus_6709#2 AT----TGTCCAGGAATATATGGGAAATAAGGGATTTGTT-TTTTCAATT-CACACATAA 224 consensus_6709#3 ATC---TGCAATAAAGTGTCCAGTCA-CAATCAGTATAAT-AGTAATATAGGAAAACTGA 232 consensus_6709#1 ATTTTTCGCATTTACATTTTTGCTATATTACTATTGTACTGATTGTGACTGGACACTTTA 269 * * * * * * * consensus_6709#0 -----AATTATCATAATATTTTACAAAGGCCAAAAATGAGTTCCGGGTTACATT-CTTTT 348 consensus_6709#2 -----ATTCGTTCGGAAACCTTGGCTTAAAAATAAGTTGGGACTGAATTTATTT-TTTTT 278 consensus_6709#3 -----AAATGCAGAAAAATCGTGTGAATAAAATGCATAGTAGGAGAATTTCATC-TTGTC 286 consensus_6709#1 CTGCAAATCATTTTGACCTTTATTAAATGACCTTTCTAATTTATAAATAACACAATTTTG 329 * * * * * * consensus_6709#0 TAAAAATCTTCCATTTATACTTGGAAAATATTCATCAATAATCATGTTACTACCCAGTAT 408 consensus_6709#2 TAAAATTATTAAAATGGAGTTTAAAAAATCCCCATAAATAATT-CAAAAATGAACAATTT 337 consensus_6709#3 AATTGAGATAATAATGATAAATAGTAA-----TAGTAATAATAATAAGATTG------TT 335 consensus_6709#1 AAGTATAAATGTCGTAACAGATGCAGA-----CATTCACCATTTTTAACATATAACGTCA 384 * * * * * * ** * consensus_6709#0 ATGTGCATTTGATGGGTTAAATGAACACTATTATT----TTTAAAGTTA-GTGTTTATAT 463 consensus_6709#2 TTGAGCGAACAATTGTTTTAAATAACTTCATCATCAGGCTCTACAGTTATAAGCCCATAA 397 consensus_6709#3 GTGTGAATATAATATGTAATAAAAGGGGTGTTATC-------AAGGTAATTACGATAAAC 388 consensus_6709#1 AATTAATTAATACATTCCTCATTTTGGCCTTTGTAAAATATCATAATTATGGACTTATAA 444 * * * * * * * * * consensus_6709#0 TCGTCAAGAGGTTTATATAAAATTGAGTGAATAAAGCAATCGTCATCCCTGTCTTTAGAA 523 consensus_6709#2 TTATTGGGATATTT-TACAAAG-------------------------------------- 418 consensus_6709#3 GAATTGGGAATGATGGATGTGA-------------------------------------- 410 consensus_6709#1 CTGTAGAGCCTGAT-GATGAAGTTATTGAAAACAATTGTTCGCTCAAATATTGCTCATTT 503 * * * * consensus_6709#0 ATAGTCGGCGTAGAGTATGAACCGGACCGTAGCTGCTACCTTGACTTAGTGGTCGGACTT 583 consensus_6709#2 ------------------------------------------------------------ consensus_6709#3 ------------------------------------------------------------ consensus_6709#1 TTGAATATTCCATGAGGATCGTTAAACTGCCAAAGATCATGTAGTTTTTTTATTGGTATC 563 consensus_6709#0 GCCTATCATGATTACTCATGCGAACTATATTGTATGAAACACG 626 consensus_6709#2 ------------------------------------------- consensus_6709#3 ------------------------------------------- consensus_6709#1 TTTAATGCTNTCATTTGTCCGACAATGGAATT----------- 595 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||