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Schistosoma mansoni
cluster # 6712 cluster # 6712       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6712#0 length = 874 sequences # 2  
consensus_6712#1 length = 745 sequences # 2  

consensusID : consensus_6712#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 874
fasta sequence
                              [ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG]

[+] EMBL CD081975             [ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCATTAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATCACGTAGTGATATGAATAGTNATACTTAGGCTANG]
[-] EMBL CD187243             [                                CTGATTGGTTTATTGAAGCATCGATTTCCGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAGATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                    ]


>consensus_6712#0 ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTC CGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC CGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATT TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA TATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCT AAAGTTAGTTCGCTTTTTCTTCCTGTATAACACAGTTGTATTCGGAATTACTCTNTCTTA ATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTGATATCATAACGTTACATGTT ATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATACATGATATGTAATATGTGCAT TAATGGTGNAATTATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGGGATC ACGTAGTGATATGAATAGTNATACTTAGGCTANG



consensusID : consensus_6712#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence
                              [GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG-AATTTATTTCTT]

[+] EMBL CD080482             [GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTGAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAGTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACCCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATCAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTGCATTAATGGTTG AATTTATTTCT ]
[-] EMBL CD074393             [                                                                                                                                                                                                                     GATGTTCAGAGAAATATACTTTTTTATTTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAATATTTACAACCCCCATGGTCCCCGCTTACTCCTTCGTTCTTTGAATCTTCAGAAACTGATATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTTTTAATCAGTGATACTTAATAATATAACTTTTTTTTGATTATTGAAGAAAAAATTTATATATATATATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCTAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTTTTTTAATCGGTTTCATTGTTTGTTTACTTGTAAATTTTTTCTGTGTATATCATAACGTTACATGTTATTTTTAAATTTATTCCTAACTGTAGAGAAAGAAAGATAACATGATATGTAATATGTGCATTAAT GTTGTAATTTATTTtct]


>consensus_6712#1 GAGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCT GAAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTA GTCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATAC CCGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTAT TTAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAA TATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGAT ATAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAAT CAGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATAT ATATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCC TAAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCT TAATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACAT GTTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGT GCATTAATGGTTGAATTTATTTCTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6712#0      ATTCACGTGCAACTAACAGAGGCAATCATTTACTGATTGGTTTATTGAAGCATCGATTTC 60
consensus_6712#1      -----------------------------------------------------------G 1
                                                                                  

consensus_6712#0      CGTACCTAATGACTGTAGAAAATGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 120
consensus_6712#1      AGGGCCAAAATTCGGCACGAGGTGAATCCATCCTCAATGCATATTTATCACTTAGCGCTG 61
                       *  ** **   * * *  *  **************************************

consensus_6712#0      AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 180
consensus_6712#1      AAGAACAAAGAAATACATTTAATGAGCTTGATTATAATCCAGAGGAATATGGGGAACTAG 121
                      ************************************************************

consensus_6712#0      TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 240
consensus_6712#1      TCGCAAATTTTTTAAAGGTTGAAGCACTTGAAAAACAAATCGAATCAATGCCTTTATACC 181
                      ************************************************************

consensus_6712#0      CGTCAAAACTTGGTAAAGAAATTACTGAATCTGATGTTCAGAGAAATATACTTTTTTATT 300
consensus_6712#1      CGTCAAAACTTGGTAAAGAAATTAATGAATCTGATGTTCAGAGAAATATACTTTTTTATT 241
                      ************************ ***********************************

consensus_6712#0      TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 360
consensus_6712#1      TAGTATCCAAATATTTTGTTGAATCGCCTGGTTCACATTGTACTCCCTTGGCAGGTAAAT 301
                      ************************************************************

consensus_6712#0      ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 420
consensus_6712#1      ATTTACAACCACCATGGTCACCGCTTACTCCTTCGTTCTCTGAATCTTCAGAAACTGATA 361
                      ************************************************************

consensus_6712#0      TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 480
consensus_6712#1      TAGACTGTAAGATTGTTGACTAGTAATGTAATACACATCCAGTACCAAGCTTTCTTAATC 421
                      ************************************************************

consensus_6712#0      AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 540
consensus_6712#1      AGTGATACTTAATAATATAACTTTTTTCTGATTATTGAAGAAAAAATTTATATATATATA 481
                      ************************************************************

consensus_6712#0      TATATATATATCCGNGATTGTGTATGGAGAATGTTACTGTGACATTNTATTTTGTTCCCT 600
consensus_6712#1      TATATATATATCCGTGATTGTGTATGGAGAATGTTACTGTGACATTTTATTTTGTTCCCT 541
                      ************** ******************************* *************

consensus_6712#0      AAAGTTAGTTCGCTTTTTCTTCCTGTA-TAACACAGTTGTATTCGGAATTACTCTNTCTT 659
consensus_6712#1      AAAGTTAGTTCGCTTTTTCTTCCTGTAATAACACAGTTGTATTCGGAATTACTCTNTCTT 601
                      *************************** ********************************

consensus_6712#0      AATCGGTTTCATTGGTTGTTTACTTGTAAATTTTTTCTGTG-ATATCATAACGTTACATG 718
consensus_6712#1      AATCGGTTTCATTGTTTGTTTACTTGTAAATTNTTTCTGTGTATATCATAACGTTACATG 661
                      ************** ***************** ******** ******************

consensus_6712#0      TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATA-CATGATATGTAATATGTG 777
consensus_6712#1      TTATTTTTAAATTTATTCCTAACTGTAGAGAGAGAGAGATAACATGATATGTAATATGTG 721
                      ***************************************** ******************

consensus_6712#0      CATTAATGGTGNAATT-ATNTCTTTCGNGGNGATGTTNACCATATGCTNTTATTTTGTGG 836
consensus_6712#1      CATTAATGGTTGAATTTATTTCTT------------------------------------ 745
                      **********  **** ** ****                                    

consensus_6712#0      GATCACGTAGTGATATGAATAGTNATACTTAGGCTANG 874
consensus_6712#1      --------------------------------------
                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)