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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6714#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 785 fasta sequence
[AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCCCTCACCTCATAATAATCCTTTCATTCATATGAATAATTTTTCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGTTTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTTTACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTACCAAAAATAGTAGCGTAATTTGATGAAGATGACGATAATGACTATTAAAGCGATTTGGTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTTAATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACAGTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTTAGATTTCTGTCATTAATACAATTACTTATAAGAGAGAAGAAATATTNAGCACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTATATATATNTATATATT]
[+] EMBL CD080518 [AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCCCTCACCTCATAATAATCCTTTCATTCATATGAATAATTTTTCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGTTTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTTTACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTACCAAAAATAGTAGCGTAATTTGATGAAGATGACGATAATGACTATTAAAGCGATTTGGTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTTAATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACAGTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTTAGATTTCTGTCATTAATACAATTACTTATAAGAGAGAAGAAATATTNAGCACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTATATATATNTATATATT]
consensusID : consensus_6714#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 685 fasta sequence
[GCTTTTTACAGCTTGGGCAAATACAGTGTATGGGAAGGCAATCCATACTGTGAGCCACATTATCTTGTATTGTTCAAAGCGTTTGGACAATATAACAGTAGTTTAACAAAAACTCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT]
[+] EMBL CD080044 [GCTTTTTACAGCTTGGGCAAATACAGTGTATGGGAAGGCAATCCATACTGTGAGCCACATTATCTTGTATTGTTCAAAGCGTTTGGACAATATAACAGTAGTTTAACAAAAACTCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT]
[-] EMBL CD201292 [ TCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCATCCGA ]
consensusID : consensus_6714#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTAGATTTCTGTTCATTAATAAAATTTACTTATAAGAGAGAAGAATTATTAAGCACCATACGCTACGCTTCTGATATTCATTTTTTTGTCTATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATTTAAATTTCTTGTCAATCTATAAAACTTACTCTTTTTTAACACTTGATTTCTTTACATAGCTTTTATTTCTGTTAACACAAATTTGGTATTAACCATAGTTGAGTTTATTTCGGTGGGTCTGTTTTAGTATTTGTTATGTCCATTTCTACCTGTTTTACTTACCGTACATAGTGTGTTTTCTTTTCATAAATGATTCATTTATTTTTTTGTCTTATGGTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTCTCTATCTCTTTGTTATTCCTTTTGATAATGTTTGAATACTGAACTGTTACTGTTAACCATTCTGTTTTTCGAGTAAAGCTTAA]
[-] EMBL CD074430 [TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTAGATTTCTGTTCATTAATAAAATTTACTTATAAGAGAGAAGAATTATTAAGCACCATACGCTACGCTTCTGATATTCATTTTTTTGTCTATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATTTAAATTTCTTGTCAATCTATAAAACTTACTCTTTTTTAACACTTGATTTCTTTACATAGCTTTTATTTCTGTTAACACAAATTTGGTATTAACCATAGTTGAGTTTATTTCGGTGGGTCTGTTTTAGTATTTGTTATGTCCATTTCTACCTGTTTTACTTACCGTACATAGTGTGTTTTCTTTTCATAAATGATTCATTTATTTTTTTGTCTTATGGTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTCTCTATCTCTTTGTTATTCCTTTTGATAATGTTTGAATACTGAACTGTTACTGTTAACCATTCTGTTTTTCGAGTAAAGCTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6714#0 AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCC-CTCACCTCATAATAATCCTTT 59
consensus_6714#2 -------TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTAT--TAAGTATTT 51
consensus_6714#1 --------------GCTTTTTACAGCTTGGGCAAATAC----AGTGTATGGGAAGGCAAT 42
* ** * * * * ** ** *
consensus_6714#0 CATTCATATGAATAATTTT-TCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGT 118
consensus_6714#2 ATTTGATGTTGTTGTTACT-GCTTAGAT-TTCTGTTCATTA------ATAAAATTTACTT 103
consensus_6714#1 CCATACTGTGAGCCACATTATCTTGTAT----TGTTCAAAGCGTTTGGACAA-TATAACA 97
* * * * ** ** * **** ** * **
consensus_6714#0 TTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTT 178
consensus_6714#2 ATAAGAGAGAAGAATTA--TTAAGCA--CCATACGC-----TACGCTTCTGATATTCATT 154
consensus_6714#1 GTAGTTTAACAAAAAC---TCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTT 154
** * * * * * * * * * **
consensus_6714#0 TACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATA 238
consensus_6714#2 T------TTTTGTCTATATATATATATATAT---ATATATATATATATATATATAT-ATA 204
consensus_6714#1 C-------CAGGATCGAACGGTCAA---CATCAAATGTAACTCAAACGTTAGTAGCCAAA 204
* ** * * * *
consensus_6714#0 GCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGT-ATTACACGAAATCTAGTTGCT 297
consensus_6714#2 GAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATT--T 262
consensus_6714#1 TTTCAAGAATTAGAATCTGGAAAT-----AATGCAACT-AGTATACAAAAT-TCTCTACC 257
* * * * * * * * * * * * * *
consensus_6714#0 AAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTA 357
consensus_6714#2 AAATTTCTTGTCAAT----CTATA---AAACTTAC-TCTTTTTTAACACTTGATTTCTTT 314
consensus_6714#1 ACAGAATCAACCACCAC--ATAGAATCTATTTTAACTC-CACTCAT-ACAGGACCAACCA 313
* * * * * * *** ** * **
consensus_6714#0 CCAAAAATAGTAGCGTAATTTG---ATGAAGATGACGATAATGACTATTAAAGCGATTTG 414
consensus_6714#2 ACATAGCTTTTATTTCTGTTAAC--ACAAATTTGGTATTAACCATAGTTGAGTTTATTTC 372
consensus_6714#1 GTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACG-TTGG 372
* * * ** * * * * **
consensus_6714#0 GTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTT 474
consensus_6714#2 GGTGGGTCTGTTTTAG---TATTTGTTA-TGTCCATTTCTACCTGTTTTACTTACCGTAC 428
consensus_6714#1 AATAAAATGCCTCTGGA---AAATCAAC---AGACTGTTGGTCGAGTTGCGTCTGAAATA 426
* * * * * * * ** *
consensus_6714#0 AATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACA 534
consensus_6714#2 ATAGTGTGTT----TTCTTTTCATAAATGATTCATTTATTTTTTTGTC-------TTATG 477
consensus_6714#1 AACGGGAAGC----CTCATGTCTTGAACCA---ACGGAAATTCATTCCT------GTGGA 473
* * ** * * * * * ** * * *
consensus_6714#0 GTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCAT 594
consensus_6714#2 GTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTC 537
consensus_6714#1 ACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAA-ACAATTAGTCAGTGAAT 532
* * * * * * * * * * **
consensus_6714#0 TTCATTTCTGGTCTATTCATTATGCTTAAATTA---TTAAGTATTTATTTGATGTTGTTG 651
consensus_6714#2 TCTATCTCTTTGTTATTCCTTTTGAT--AATGT---TTGAATACTGAACTGTTACTGTTA 592
consensus_6714#1 TAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTG 592
* * * ** * * * * * * * * * *
consensus_6714#0 TTACTGCTTTAGATTTCTGTCATTAATACAAT-TACTTATAAGAGAGAAGAAATATTNAG 710
consensus_6714#2 --ACCATTCTGTTTTTCGAGTAA-AGCTTAA----------------------------- 620
consensus_6714#1 --AATGCGCTAAAATT-GGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAA 649
* * ** * * *
consensus_6714#0 CACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTAT 770
consensus_6714#2 ------------------------------------------------------------
consensus_6714#1 CTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT------------------------ 685
consensus_6714#0 ATATATNTATATATT 785
consensus_6714#2 ---------------
consensus_6714#1 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||