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Schistosoma mansoni
cluster # 6714 cluster # 6714       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6714#0 length = 785 sequences # 1  
consensus_6714#1 length = 685 sequences # 2  
consensus_6714#2 length = 620 sequences # 1  

consensusID : consensus_6714#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence
                              [AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCCCTCACCTCATAATAATCCTTTCATTCATATGAATAATTTTTCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGTTTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTTTACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTACCAAAAATAGTAGCGTAATTTGATGAAGATGACGATAATGACTATTAAAGCGATTTGGTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTTAATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACAGTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTTAGATTTCTGTCATTAATACAATTACTTATAAGAGAGAAGAAATATTNAGCACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTATATATATNTATATATT]

[+] EMBL CD080518             [AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCCCTCACCTCATAATAATCCTTTCATTCATATGAATAATTTTTCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGTTTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTTTACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTACCAAAAATAGTAGCGTAATTTGATGAAGATGACGATAATGACTATTAAAGCGATTTGGTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTTAATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACAGTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTTAGATTTCTGTCATTAATACAATTACTTATAAGAGAGAAGAAATATTNAGCACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTATATATATNTATATATT]


>consensus_6714#0 AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCCCTCACCTCATAATAATCCTTTC ATTCATATGAATAATTTTTCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGTTT AAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTTTA CTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGC ACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAA TTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTACCA AAAATAGTAGCGTAATTTGATGAAGATGACGATAATGACTATTAAAGCGATTTGGTCATA ATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTTAATGAT TGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACAGTCTAT CTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCATTTCATT TCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTT TAGATTTCTGTCATTAATACAATTACTTATAAGAGAGAAGAAATATTNAGCACCATACGC TACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTATATATATNTAT ATATT



consensusID : consensus_6714#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 685
fasta sequence
                              [GCTTTTTACAGCTTGGGCAAATACAGTGTATGGGAAGGCAATCCATACTGTGAGCCACATTATCTTGTATTGTTCAAAGCGTTTGGACAATATAACAGTAGTTTAACAAAAACTCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT]

[+] EMBL CD080044             [GCTTTTTACAGCTTGGGCAAATACAGTGTATGGGAAGGCAATCCATACTGTGAGCCACATTATCTTGTATTGTTCAAAGCGTTTGGACAATATAACAGTAGTTTAACAAAAACTCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAACTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT]
[-] EMBL CD201292             [                                                                                                                                    TCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAATGTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGTATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCATACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCTGAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCATCCGA                                                                                                     ]


>consensus_6714#1 GCTTTTTACAGCTTGGGCAAATACAGTGTATGGGAAGGCAATCCATACTGTGAGCCACAT TATCTTGTATTGTTCAAAGCGTTTGGACAATATAACAGTAGTTTAACAAAAACTCCAATA CTTGACGCTTCATCTCATGTTCAGCAAGAAGTTTCCAGGATCGAACGGTCAACATCAAAT GTAACTCAAACGTTAGTAGCCAAATTTCAAGAATTAGAATCTGGAAATAATGCAACTAGT ATACAAAATTCTCTACCACAGAATCAACCACCACATAGAATCTATTTTAACTCCACTCAT ACAGGACCAACCAGTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTA GTAGAACGTTGGAATAAAATGCCTCTGGAAAATCAACAGACTGTTGGTCGAGTTGCGTCT GAAATAAACGGGAAGCCTCATGTCTTGAACCAACGGAAATTCATTCCTGTGGAACCCAAA GCATCAGCTAGGAAACCTGTCGAACAAAAACCGAAACAATTAGTCAGTGAATTAAAACAA AATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTGAATGCGCT AAAATTGGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAACTCCGGGTATT ACACGAAATCTAGTTGCTAAATTTT



consensusID : consensus_6714#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence
                              [TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTAGATTTCTGTTCATTAATAAAATTTACTTATAAGAGAGAAGAATTATTAAGCACCATACGCTACGCTTCTGATATTCATTTTTTTGTCTATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATTTAAATTTCTTGTCAATCTATAAAACTTACTCTTTTTTAACACTTGATTTCTTTACATAGCTTTTATTTCTGTTAACACAAATTTGGTATTAACCATAGTTGAGTTTATTTCGGTGGGTCTGTTTTAGTATTTGTTATGTCCATTTCTACCTGTTTTACTTACCGTACATAGTGTGTTTTCTTTTCATAAATGATTCATTTATTTTTTTGTCTTATGGTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTCTCTATCTCTTTGTTATTCCTTTTGATAATGTTTGAATACTGAACTGTTACTGTTAACCATTCTGTTTTTCGAGTAAAGCTTAA]

[-] EMBL CD074430             [TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGTTGTTGTTACTGCTTAGATTTCTGTTCATTAATAAAATTTACTTATAAGAGAGAAGAATTATTAAGCACCATACGCTACGCTTCTGATATTCATTTTTTTGTCTATATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATTTAAATTTCTTGTCAATCTATAAAACTTACTCTTTTTTAACACTTGATTTCTTTACATAGCTTTTATTTCTGTTAACACAAATTTGGTATTAACCATAGTTGAGTTTATTTCGGTGGGTCTGTTTTAGTATTTGTTATGTCCATTTCTACCTGTTTTACTTACCGTACATAGTGTGTTTTCTTTTCATAAATGATTCATTTATTTTTTTGTCTTATGGTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTCTCTATCTCTTTGTTATTCCTTTTGATAATGTTTGAATACTGAACTGTTACTGTTAACCATTCTGTTTTTCGAGTAAAGCTTAA]


>consensus_6714#2 TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTATTAAGTATTTATTTGATGT TGTTGTTACTGCTTAGATTTCTGTTCATTAATAAAATTTACTTATAAGAGAGAAGAATTA TTAAGCACCATACGCTACGCTTCTGATATTCATTTTTTTGTCTATATATATATATATATA TATATATATATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGA TTTACCATTGTTAGTATCATTTAAATTTCTTGTCAATCTATAAAACTTACTCTTTTTTAA CACTTGATTTCTTTACATAGCTTTTATTTCTGTTAACACAAATTTGGTATTAACCATAGT TGAGTTTATTTCGGTGGGTCTGTTTTAGTATTTGTTATGTCCATTTCTACCTGTTTTACT TACCGTACATAGTGTGTTTTCTTTTCATAAATGATTCATTTATTTTTTTGTCTTATGGTA CGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTCTCT ATCTCTTTGTTATTCCTTTTGATAATGTTTGAATACTGAACTGTTACTGTTAACCATTCT GTTTTTCGAGTAAAGCTTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6714#0      AGGGCCCGAAATCATTTTGTTAATGGTTAAATCCCTCC-CTCACCTCATAATAATCCTTT 59
consensus_6714#2      -------TTAATCATTTCATTTCTGGTCTATTCATTATGCTTAAATTAT--TAAGTATTT 51
consensus_6714#1      --------------GCTTTTTACAGCTTGGGCAAATAC----AGTGTATGGGAAGGCAAT 42
                                      *  **   * *        *      *    **   **     *

consensus_6714#0      CATTCATATGAATAATTTT-TCTCGTATATTTTTTTCACCGCACACCAGCAATTATAGGT 118
consensus_6714#2      ATTTGATGTTGTTGTTACT-GCTTAGAT-TTCTGTTCATTA------ATAAAATTTACTT 103
consensus_6714#1      CCATACTGTGAGCCACATTATCTTGTAT----TGTTCAAAGCGTTTGGACAA-TATAACA 97
                         *  * *         *  **   **    * ****            ** * **   

consensus_6714#0      TTAAGAGAACACAGGTAAGTCAAGTAGTTCATATGTTTTCTTGTTTTTCAAAAAATCTTT 178
consensus_6714#2      ATAAGAGAGAAGAATTA--TTAAGCA--CCATACGC-----TACGCTTCTGATATTCATT 154
consensus_6714#1      GTAGTTTAACAAAAAC---TCCAATACTTGACGCTTCATCTCATGTTCAGCAAGAAGTTT 154
                       **    *  * *      *  *  *    *               *    *      **

consensus_6714#0      TACTTCCTTTTAGCTGTTCCTCCGAGTCTACTGAATGCGCTAAAATTGGTCAGTACCATA 238
consensus_6714#2      T------TTTTGTCTATATATATATATATAT---ATATATATATATATATATATAT-ATA 204
consensus_6714#1      C-------CAGGATCGAACGGTCAA---CATCAAATGTAACTCAAACGTTAGTAGCCAAA 204
                                                   *    **        *    *       * *

consensus_6714#0      GCACAAATGGTAAAACGAGTGAATTTCCAACTCCGGGT-ATTACACGAAATCTAGTTGCT 297
consensus_6714#2      GAGAGAGAGAGAGAGAGAGAGAGAGTCCCATTTTGATTTACCATTGTTAGTATCATT--T 262
consensus_6714#1      TTTCAAGAATTAGAATCTGGAAAT-----AATGCAACT-AGTATACAAAAT-TCTCTACC 257
                           *     * *    *  *       * *     * *  *     * * *   *   

consensus_6714#0      AAATTTTCTGCCCTTTCTGCTGCATCCTAACTTATGTCATATTCTCAACTTTTTTTCTTA 357
consensus_6714#2      AAATTTCTTGTCAAT----CTATA---AAACTTAC-TCTTTTTTAACACTTGATTTCTTT 314
consensus_6714#1      ACAGAATCAACCACCAC--ATAGAATCTATTTTAACTC-CACTCAT-ACAGGACCAACCA 313
                      * *        *        *  *    *  ***  **    *    **           

consensus_6714#0      CCAAAAATAGTAGCGTAATTTG---ATGAAGATGACGATAATGACTATTAAAGCGATTTG 414
consensus_6714#2      ACATAGCTTTTATTTCTGTTAAC--ACAAATTTGGTATTAACCATAGTTGAGTTTATTTC 372
consensus_6714#1      GTGCAAATGGTGATGTTTTTCCGTCGTCAGGACGTGCTCGTCAATTAGTAGAACG-TTGG 372
                          *  *  *       **        *    *         *    *       **  

consensus_6714#0      GTCATAATTAATAGGGACACATTTTTCCCTAACAGTTTTTTTCAATTTTATTTTCAAGTT 474
consensus_6714#2      GGTGGGTCTGTTTTAG---TATTTGTTA-TGTCCATTTCTACCTGTTTTACTTACCGTAC 428
consensus_6714#1      AATAAAATGCCTCTGGA---AAATCAAC---AGACTGTTGGTCGAGTTGCGTCTGAAATA 426
                                 *   *    *  *           * *    *   **   *        

consensus_6714#0      AATGATTGCTAATACTCTTTTATTACAACTTTTACTGCTATTATTGCCATCCTTGTTACA 534
consensus_6714#2      ATAGTGTGTT----TTCTTTTCATAAATGATTCATTTATTTTTTTGTC-------TTATG 477
consensus_6714#1      AACGGGAAGC----CTCATGTCTTGAACCA---ACGGAAATTCATTCCT------GTGGA 473
                      *  *           ** * *  *  *      *      **  *  *        *   

consensus_6714#0      GTCTATCTCTTCATATTGGTCTACTTTNTCATAACAACAGATTGCCGTTATCTTAATCAT 594
consensus_6714#2      GTACGAAATTTTATCCCGTTTTTCGTTGTCATATTCAATGCTTCCACTTTTCTTCTTGTC 537
consensus_6714#1      ACCCAAAGCATCAGCTAGGAAACCTGTCGAACAAAAACCGAA-ACAATTAGTCAGTGAAT 532
                                * *    *     *  *   * *   *  *    *  **           

consensus_6714#0      TTCATTTCTGGTCTATTCATTATGCTTAAATTA---TTAAGTATTTATTTGATGTTGTTG 651
consensus_6714#2      TCTATCTCTTTGTTATTCCTTTTGAT--AATGT---TTGAATACTGAACTGTTACTGTTA 592
consensus_6714#1      TAAAACAAAATTTCAGTCATAAACCTGAAGATGAAGCTTACTGTTCCTCCGAGTCTACTG 592
                      *  *          * ** *     *  *        * * *  *     *    *  * 

consensus_6714#0      TTACTGCTTTAGATTTCTGTCATTAATACAAT-TACTTATAAGAGAGAAGAAATATTNAG 710
consensus_6714#2      --ACCATTCTGTTTTTCGAGTAA-AGCTTAA----------------------------- 620
consensus_6714#1      --AATGCGCTAAAATT-GGTCAGTACCATAGCACANATGGTANAACGAGTGAATTTCCAA 649
                        *      *    **     *  *    *                              

consensus_6714#0      CACCATACGCTACGCTTCTGATATTCATTNTTTTTNCCTTNTNNTTNTATNTATTTNTAT 770
consensus_6714#2      ------------------------------------------------------------
consensus_6714#1      CTCCGGGTATTACACGAAATCTAGTTGCTAAATTTT------------------------ 685
                                                                                  

consensus_6714#0      ATATATNTATATATT 785
consensus_6714#2      ---------------
consensus_6714#1      ---------------
                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)